AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nenu1g00496 | ATGGAAGTTGCCACCGTGTCTTCACATTTCTTCCTTCACACTAGAATGGTGTCATCTCCTCATCCACGGAGTAGAAATTCAAAACGAACCCTAAATTGCTCAGGTGGGGTTTCTGTCAGATCTCTAACCAGCAATCTCGTTGTTCCCTTCGTCGGCGGGAGCGTTTCTGGAGATTTCTGTGGTCAGAAAATCCGTCCTGCATCGCTCAATCCATCCTTAACATTCTCCTCTGATTCTCGCAGAAAAAGAGGGGTGGTCACCATGGTTATTCCTTTCTTGAGAGGAAGTGCATGGGAGCAGCCTCCTCCTGATTTAGCATCTTATCTGTATAAGAATCGAATTGTATACTTGGGCATGTCTCTTGTTCCTTCTGTCACAGAATTGATCCTAGCAGAATTTTTATACCTTCAGTATGAGGATGATCAGAAGCCAATTTACCTATACATGAACTCCACTGGGACAACCAAGGGAGGGGAGAAGTTAGGTTATGAGACAGAGGCTTTTGCAATTTATGATGTCATGAGGTATGTCAAACCACCCATCTTTACACTTTGTGTTGGTAATGCTTGGGGAGAGGCAGCTTTGCTTTTGGCTGCTGGAGCTAAAGGAAACCGCTCTGCTTTGCCCTCATCTACAATCATGATAAAGCAGCCAATTGCAAGATTTCAAGGTCAAGCAACAGATATCGACCTTGCAAGAAAAGAAGTAAAGAATGTGAAGAAAGAATTGGTTAATCTCTATGCAAGACATATAGGGAAATCCCCAGAAAAAATTGAGGAGGATATCAGGCGTCCAAAATATTTCAGCCCTAGTGAAGCGGTTGAGTATGGCATCATTGATAAGGTACTGTACAATGAAAGAGCAGAGTCCTTATCCATCCATCGTCTTGAGACAAATGGAGGGAAGGTGACGGAGGATAAGAATGTGAGATGCAAGAGACCAGAGCTCTGCACAGACGACGGGGTGAACATCGTGGTAACAGACCATGGCGAAGGCGACTACACAGACTTCATCCTCAGCCCCCGTGCCTTCACCAAGCTGGCTCGCCCCAGCAGAGCCTACGATTTGATGGCTTATGGTGTGGTGGACATAGAGTTCAGAAGGATATCTTGCCAATATCCAGGGTACAACCTCATGATTAAGGTCCATGAGCACAGCAGGTACCCCTACTACTTGGCCATAGTTATCATATACCAATCTGGCCAAAAGGACATTACAGCCGTTGATGTGTGGCAGGAGGAGTACAAGGAATGGAGGTGCATGCGCAACGCCTATGGTGCAGTCTGGGACATGGCCAACCCTCCCAAGGATGCTGTCAGCCTGAGGCTCCAAATCAGTGGCGATGACGGACAAAAGTGGGTACAGCTGAATAGCGTGATCCCTACTGACTGGAAGGCAGGAGTTGCCTATGACTCAGCCATTCAGCTCGATTGA | 1434 | 46.79 | MEVATVSSHFFLHTRMVSSPHPRSRNSKRTLNCSGGVSVRSLTSNLVVPFVGGSVSGDFCGQKIRPASLNPSLTFSSDSRRKRGVVTMVIPFLRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDDQKPIYLYMNSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIKQPIARFQGQATDIDLARKEVKNVKKELVNLYARHIGKSPEKIEEDIRRPKYFSPSEAVEYGIIDKVLYNERAESLSIHRLETNGGKVTEDKNVRCKRPELCTDDGVNIVVTDHGEGDYTDFILSPRAFTKLARPSRAYDLMAYGVVDIEFRRISCQYPGYNLMIKVHEHSRYPYYLAIVIIYQSGQKDITAVDVWQEEYKEWRCMRNAYGAVWDMANPPKDAVSLRLQISGDDGQKWVQLNSVIPTDWKAGVAYDSAIQLD | 477 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nenu1g00496 | 477 | PANTHER | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT | 77 | 289 | IPR023562 | GO:0004176(PANTHER)|GO:0004252(PANTHER)|GO:0006515(PANTHER)|GO:0009368(PANTHER)|GO:0051117(PANTHER) | |
| Nenu1g00496 | 477 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 390 | 472 | IPR007117 | - | |
| Nenu1g00496 | 477 | PRINTS | Clp protease catalytic subunit P signature | 204 | 223 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Nenu1g00496 | 477 | PRINTS | Clp protease catalytic subunit P signature | 261 | 280 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Nenu1g00496 | 477 | PRINTS | Clp protease catalytic subunit P signature | 183 | 200 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Nenu1g00496 | 477 | PRINTS | Clp protease catalytic subunit P signature | 144 | 164 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Nenu1g00496 | 477 | PRINTS | Clp protease catalytic subunit P signature | 104 | 119 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Nenu1g00496 | 477 | SUPERFAMILY | Barwin-like endoglucanases | 308 | 375 | IPR036908 | - | |
| Nenu1g00496 | 477 | Pfam | Expansin C-terminal domain | 380 | 461 | IPR007117 | - | |
| Nenu1g00496 | 477 | Gene3D | - | 76 | 291 | - | - | |
| Nenu1g00496 | 477 | Gene3D | - | 373 | 476 | IPR036749 | - | |
| Nenu1g00496 | 477 | SUPERFAMILY | ClpP-crotonase | 99 | 287 | IPR029045 | - | |
| Nenu1g00496 | 477 | CDD | S14-ClpP-2 | 104 | 282 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Nenu1g00496 | 477 | Coils | Coil | 229 | 249 | - | - | |
| Nenu1g00496 | 477 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 271 | 376 | IPR007112 | - | |
| Nenu1g00496 | 477 | FunFam | ATP-dependent Clp protease proteolytic subunit | 79 | 287 | - | - | |
| Nenu1g00496 | 477 | SUPERFAMILY | PHL pollen allergen | 377 | 472 | IPR036749 | - | |
| Nenu1g00496 | 477 | Pfam | Clp protease | 104 | 284 | IPR023562 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nenu1g00496 | K01358 | ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nenu | Nenu-Chr1:13778660 | Nenu4g00610 | Nenu-Chr4:14833339 | dispersed | |
| Nenu | Nenu-Chr1:13778660 | Nenu6g00999 | Nenu-Chr6:35425147 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Nenu1g00311 | . | 40 | 273 | Expansin gene family | AT1G65680 | 61.017 | 3.84e-108 | 312.0 | |
| Nenu1g00401 | . | 5 | 247 | Expansin gene family | AT4G17030 | 41.365 | 1.80e-57 | 182.0 | |
| Nenu1g00496 | . | 43 | 249 | Expansin gene family | AT4G17030 | 46.635 | 2.46e-62 | 201.0 | |
| Nenu1g00663 | . | 25 | 273 | Expansin gene family | AT1G65680 | 68.526 | 1.27e-123 | 351.0 | |
| Nenu1g02912 | . | 1 | 260 | Expansin gene family | AT4G28250 | 70.992 | 1.15e-140 | 394.0 | |
| Nenu1g02935 | . | 3 | 247 | Expansin gene family | AT3G15370 | 62.097 | 1.03e-117 | 335.0 | |
| Nenu1g04664 | . | 1 | 260 | Expansin gene family | AT4G28250 | 71.756 | 4.66e-142 | 397.0 | |
| Nenu1g04819 | . | 5 | 145 | Expansin gene family | AT2G03090 | 72.917 | 1.70e-73 | 219.0 | |
| Nenu1g06818 | . | 48 | 249 | Expansin gene family | AT1G69530 | 58.416 | 1.44e-68 | 208.0 | |
| Nenu2g00043 | . | 8 | 253 | Expansin gene family | AT2G40610 | 82.731 | 5.01e-153 | 424.0 | |
| Nenu2g00606 | . | 6 | 257 | Expansin gene family | AT2G39700 | 86.111 | 1.31e-167 | 462.0 | |
| Nenu2g02213 | . | 6 | 257 | Expansin gene family | AT2G39700 | 84.524 | 2.26e-165 | 456.0 | |
| Nenu2g04006 | . | 1 | 252 | Expansin gene family | AT2G03090 | 78.968 | 1.81e-152 | 423.0 | |
| Nenu3g02390 | . | 39 | 264 | Expansin gene family | AT3G03220 | 80.088 | 9.58e-143 | 399.0 | |
| Nenu3g03140 | . | 12 | 251 | Expansin gene family | AT5G56320 | 60.833 | 9.15e-108 | 310.0 | |
| Nenu3g03141 | . | 39 | 260 | Expansin gene family | AT5G39270 | 68.919 | 4.70e-115 | 328.0 | |
| Nenu3g03243 | . | 1 | 250 | Expansin gene family | AT1G69530 | 85.657 | 3.28e-158 | 439.0 | |
| Nenu4g00984 | . | 11 | 255 | Expansin gene family | AT4G01630 | 72.245 | 3.35e-138 | 387.0 | |
| Nenu4g00985 | . | 1 | 255 | Expansin gene family | AT4G01630 | 74.118 | 2.35e-143 | 400.0 | |
| Nenu4g00986 | . | 10 | 255 | Expansin gene family | AT4G01630 | 74.494 | 1.70e-139 | 390.0 | |
| Nenu4g01313 | . | 39 | 265 | Expansin gene family | AT3G03220 | 82.379 | 1.61e-146 | 409.0 | |
| Nenu4g02177 | . | 1 | 250 | Expansin gene family | AT1G69530 | 86.056 | 7.49e-158 | 436.0 | |
| Nenu5g00098 | . | 7 | 253 | Expansin gene family | AT2G40610 | 82.996 | 4.71e-153 | 424.0 | |
| Nenu5g02929 | . | 18 | 252 | Expansin gene family | AT1G20190 | 77.021 | 1.45e-142 | 400.0 | |
| Nenu5g02977 | . | 47 | 265 | Expansin gene family | AT4G38400 | 64.384 | 4.44e-106 | 311.0 | |
| Nenu5g03087 | . | 14 | 254 | Expansin gene family | AT4G38210 | 67.769 | 1.20e-123 | 350.0 | |
| Nenu6g00178 | . | 5 | 264 | Expansin gene family | AT3G45970 | 61.154 | 1.01e-111 | 320.0 | |
| Nenu6g00276 | . | 16 | 252 | Expansin gene family | AT1G20190 | 76.793 | 2.14e-140 | 392.0 | |
| Nenu6g00877 | . | 201 | 254 | Expansin gene family | AT1G65680 | 58.182 | 4.97e-13 | 59.3 | |
| Nenu6g00878 | . | 40 | 273 | Expansin gene family | AT1G65680 | 67.797 | 9.59e-120 | 342.0 | |
| Nenu6g00938 | . | 8 | 249 | Expansin gene family | AT4G17030 | 41.406 | 1.49e-58 | 184.0 | |
| Nenu7g00022 | . | 6 | 252 | Expansin gene family | AT2G03090 | 70.968 | 7.20e-144 | 402.0 |