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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00518 ATGCTCCACGGCTTAGCTGCTTCGTCATCTCCTTCACTTCTGGTCTCTACTTCTCGCCTCTCCACTCTCTCTTCCTCTCTCCTCCCTCCCGCTAAGCTCTCCATTAAACCTTCGACCTTTCCGCGTAATTCCAAATCACTGTCTCTCTTCGCCAGCCGCATGAGTTGGTTGGGAAAGCTAGGGCTAGGTTTTGGCACCCGAGCTGCTGAAACCTCCGCGGTTTCTTCTTCTTCTTCCATCGCTCAAGGTCCCGACGACGACATACCCGCACCCGGGCAGCAGTTCGCTCAATTCGGTGCCGGATGTTTCTGGGGCGTCGAGTTGGCTTACCAGAGAGTTCCCGGAGTTACCAAGACGGAGGTTGGATACAGTCAAGGTCATCCGCATAATCCGACCTATAACGACGTTTGCTCGGGGACCACGCAGCATGCCGAGGTTGTTAGGGTTCAATACGATCCCAAGGAGTGCAGTTACGAGAATTTGCTTGATGTTTTTTGGGCTCGCCATGATCCTACCACGCTTAATCGGCAGGGGAATGATGTAGGCACACAGTATAGATCTGGTATATACTATTACACGCCAGAGCAAGAGAAAGCTGCACGAGAGTCAATGGAACAACAGCAGAAACAGTTAAGCAGGAAAATTGTTACCGAGATTCTACCAGTAAAGAAATTCTACAGAGCAGAAGAGTACCATCAACAGTATCTGGCAAAAGGAGGCCGATTTGGGTTCAAGCAGTCAACCGAGAAAGGCTGCAATGATCCAATCCGCTGCTACGGCTGA 783 50.96 MLHGLAASSSPSLLVSTSRLSTLSSSLLPPAKLSIKPSTFPRNSKSLSLFASRMSWLGKLGLGFGTRAAETSAVSSSSSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSQGHPHNPTYNDVCSGTTQHAEVVRVQYDPKECSYENLLDVFWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAARESMEQQQKQLSRKIVTEILPVKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 260
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00518 260 Pfam Peptide methionine sulfoxide reductase 96 238 IPR002569 GO:0008113(InterPro)
Nenu1g00518 260 Gene3D Peptide methionine sulphoxide reductase MsrA 78 260 IPR036509 GO:0008113(InterPro)
Nenu1g00518 260 FunFam Peptide methionine sulfoxide reductase 83 260 - -
Nenu1g00518 260 SUPERFAMILY Peptide methionine sulfoxide reductase 88 247 IPR036509 GO:0008113(InterPro)
Nenu1g00518 260 PANTHER MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE 76 258 IPR050162 GO:0005737(PANTHER)|GO:0008113(PANTHER)|GO:0034599(PANTHER)|GO:0036456(PANTHER)
Nenu1g00518 260 NCBIfam peptide-methionine (S)-S-oxide reductase MsrA 96 238 IPR002569 GO:0008113(InterPro)
Nenu1g00518 260 Hamap Peptide methionine sulfoxide reductase MsrA [msrA]. 93 250 IPR002569 GO:0008113(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00518 K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:14527105 Nenu6g01012 Nenu-Chr6:35695375 wgd