AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00535 ATGGCAACTGCTAACCCTTTCGACCTGTTGGGTGACGATGATAACGACGATCCGTCGCAGTTGATCGCTGCTCAGCAGCAGAAGTTGTTACCGAAGAAAGCCCTATCTCCGACGCAAGCCACTGCTCCACAGCAGACCAAGCAGGCTAAGCTGCCCACCAAACCCCTTCCACCGGCCCAGGCTGTAAGAGAGGCAAAGAACGAACCTGCCCGTGGAGGCCGAGGTGGTGGACGTGGATTTGGCCGTGGTGGTGGGCGTGGATTCAATAGAGATTCAGTTAATAACGAAAATGCATTTAGCAGCAATGGATTCTCTGGAGGGTATGGTGCCCTGAAGAGGGAGATACTGGGAAACCCTCTGAAAGGCGTGGCTATGGTGGACCACGTGGTCCTTACCGTGGTGGTCGTCGGGGCGGATTCAATAATGACGAAGTGGCAGAAGGGGAGCGCCCTAAGAGGATATTTGAACGTCGGAGTGGGACTGGTCGAGGGTGAATATCCATTTTGCATAAATGAGATGAAACGTGAAGGATCTGGTCGTGGTAACTGGGGAACTCCCACTGATGAAATCGTACAGGAGACTGAGGAAGTTGAGAAGACTACAATTACTGAGAAGACAGGGGGAGAGGATGAAACTGGGGATACCAACAAGGAGAATCCTGTAAATGAGCCAGAAGAGAAGGAACCTGAAGATAAGGAAATGACACTTGATGAGTATGAGAAGGTACTGGAAGAGAAACGCAAGGCTCTGCAGGCACTGAAGACCGAGGAACGGAAGGTGAACTTGGACAAGGACTTTGAATCCATGCAGCAGCTTGCTAGCAAGAAGGGCAATGACGATGTCTTCATTAAATTGGGTTCGGAGAAGGACAAGCGCAAAGAGGCGATTGACAAGGAAGAGAGAACTAAAAAGTCTGTGAGCATTAATGAATTCCTAAAGCCTGCTGAAGGAGGGAGATATTATAGCCCTGGAGGGCGTGGTCGTGGACGCGGAGGCCGAGGTTCCAGAGGAGGATTTAGTGGTGTGAACCAGGCGAGCAATGTGGTGGCCCCGTCAATTGAAGATCCCGGGCAATTCCCAACCTTGGGTGGCAAGTGA 1098 51.46 MATANPFDLLGDDDNDDPSQLIAAQQQKLLPKKALSPTQATAPQQTKQAKLPTKPLPPAQAVREAKNEPARGGRGGGRGFGRGGGRGFNRDSVNNENAFSSNGFSGGYGALKREILGNPLKGVAMVDHVVLTVVVVGADSIMTKWQKGSALRGYLNVGVGLVEGEYPFCINEMKREGSGRGNWGTPTDEIVQETEEVEKTTITEKTGGEDETGDTNKENPVNEPEEKEPEDKEMTLDEYEKVLEEKRKALQALKTEERKVNLDKDFESMQQLASKKGNDDVFIKLGSEKDKRKEAIDKEERTKKSVSINEFLKPAEGGRYYSPGGRGRGRGGRGSRGGFSGVNQASNVVAPSIEDPGQFPTLGGK 365
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00535 365 MobiDBLite consensus disorder prediction 195 234 - -
Nenu1g00535 365 MobiDBLite consensus disorder prediction 19 51 - -
Nenu1g00535 365 Pfam Hyaluronan - mRNA binding family 171 260 IPR006861 -
Nenu1g00535 365 SMART HABP4-PAI-RBP1-2 164 261 IPR006861 -
Nenu1g00535 365 MobiDBLite consensus disorder prediction 291 365 - -
Nenu1g00535 365 Coils Coil 236 263 - -
Nenu1g00535 365 MobiDBLite consensus disorder prediction 291 307 - -
Nenu1g00535 365 Pfam Stm1 1 76 IPR019084 -
Nenu1g00535 365 MobiDBLite consensus disorder prediction 1 89 - -
Nenu1g00535 365 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 109 IPR039764 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0005634(PANTHER)|GO:0005737(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00535 K13199 plasminogen activator inhibitor 1 RNA-binding protein
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:164710878 Nenu1g00535 Nenu-Chr1:14867378 transposed
Nenu Nenu-Chr1:14867378 Nenu6g01029 Nenu-Chr6:35910462 wgd