AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00536 ATGGTGTTGCTCGCATTCCCGTTAGTTCTTTCTGCTTTAAAGCCCCATGGAACGCATCTGGCGCTCTTCTACCCCGGGAGACGAAGCCCATTCCACTTCTGCGGGCCTCTCCGTCGCCATTCCTGTCTTCGGTTCAGTAAGACCACTGTTTCAGCTATTAGCACATCTGCAATATCCCAGCCTCCATCCAAAGATCCAAAGCCACATACCAGAACTTCTGTTCCGACATTTCAACAGGCGATTCAGCGCCTCCAGGAATATTGGGCTTCTGTTGGATGTGCTGTCATGCAATGTAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTTTGACATTCTTGAGGGTTCTTGGCCCTGAACCGTGGAATGTTGCGTATGTGGAGCCTAGTATAAGGCCAGATGATAGTCGTTATGGAGAGAACCCAAATAGGCTCCAACGCCATACTCAATTTCAGGTCATACTAAAGCCAGATCCAGGAAATTCACAAGATCTTTTTATCCGTAGCCTTGCAGCCTTAGGTATTGATGTCAATGCACATGACATACGCTTTGTGGAGGACAACTGGGAAAGTCCAGTTCTTGGTGCTTGGGGATTGGGCTGGGAAGTGTGGATGGATGGGATGGAGATCACACAATTCACATACTTCCAGCAGGCTGGGAGTCTTCCTTTGCTGCCAATATCTGTAGAGATCACTTATGGTCTTGAAAGGATCCTTATGTTGCTTCAGGGAGTTGATCATTTCAAGAAAATCCAATATGCTGATGGAATTACATATGGAGAACTGTTCCTAGAGAATGAGAAGGAAATGAGTGCATATTATTTAGAACATGCCAGTGTTGATAATATCCAAAGGCACTTTGAGATATTTGAGGAAGAGGCTCGTTCCTTGTTGTCATTGGGTCTTGCAGTACCTGCTTTAGCTCGGCAATGTGCTCAACTTTGGGTAAAGATGCGAGAGTCCCTTGGGCACCCTCTAGGCATTATATCTGAACCCAGTTATGTTGCTTGTCCTAAAGACGATCTTGAGAAGGCTCTGAGAAAGGTGCCAGAGGTTCCTAGGTCATTCATTCTTGAAATTGGAACAGAAGAAATGCCACCTCAAGATGTAGTTGATGCAAGCCAACAGCTTAAAGATTTAATCATACAGTTACTTGAGAAGCAAAGGTTGAATCATGGTGAAGTATTCACATATGGAACGCCACGCAGAATAGTGGTTCTTGTTGACAGGCTTTGTCCTAAGCAAATGGAGAATGACATTGAAGTACGGGGACCTCCAGTGGCAAAGGCATTTGATCATCAGGGAAATCCTACTAAGGCTGCTGAGGGTTTTGCCCGTAAATATGGTGCTTCTTTGGATTCTTTGTTTAGAAAGGCAGATGGTAAGACAGAATATGTATATATTCGTGTGAAGGAGTGTGACCGTATTGCTTTAGAGGTTCTGTCTGAAGAATTGCCGACTATCATTGGTAAAATATCATTCCTGAAATCAATGCGCTGGAATTCTGAGTTCATGTTCAGTAGACCCATTCGTTGGATTTTAGCCCTCCATGGGAATGTCGTGGTGCCTTTCGTGTTTGCTGGAATTATGAGTGGAAGTCTGTCTTATGGTCTTCGTAATACCCCATCAGCTACCATGGAGGTAGAAAGTGCAGAATCTTATGTAGGACTTATGAAGAAGGCAGGGATTTCTGTAGAAATTGAGAAACGCAAGAACACAATTTTAGAGTGCTCTACTTCCTTGGCAGAAAGTGTTGGTGGACATCTTGTCATGCAGAATAGCTTACTTGAGGAGGTTGTGAATCTTGTTGAGGCACCTGTTCCAGTCCTTGGATCTTTCAAGGAGTCCTTCTTAGAGCTTCCTAATGATCTCTTAGTAATGGTCATGCAGAAGCACCAGAAGTACTTTGCTATCACAGATAACCATGGGAAATTATTGCCAAACTTCATTGCTGTGGCTAATGGAGCAATTGATGAGATGGTGGTAAGAAGAGGCAATGAAGCTGTACTGAGAGCTCGCTATGAGGATGCAAAGTTTTTCTATGAGATGGACACTAATAAAAGGTTTTCTGAATTCAGAAGTCAGTTAAAGGGGATTTTGTTTCATGAGAAGCTTGGAACAATGCTGGACAAAATGATGCGTGTCCAAAATATTGTAACCAAACTAAGTTTAGCCATGGGAATTGAGAATGATACACTGCCAGCTGTACAAGAAGCTGCATCACTGGCTATGTCAGATCTTGCTACTGCTGTCGTTACAGAATTTACTTCCCTCTCTGGAATTATGGCCCGTCATTATGCACTAAGAGATGGCTATTCTGAACAGGTTGCAGAAGCCTTGTTTGAGGTCACACTTCCCAGGTTTTCTGGGGACCTTATTCCAAAGACTGATGTAGGGATGGTTCTAGCAGTTGCCGACAGATTGGATAGTCTTGTTGGCTTATTTGGAGTTGGGTGTCAGCCAAGTTCTTCTAATGATCCATTTGGCTTGCGAAGAATCTCTTATGGTCTTGTCCAAGTGTTGGTGGAAAATGACAAGAACCTGGATTTAAGAAATGCTTTGGTAGTTGCTGCAGATGTTCAACCCATAAAGATGGATGCCAATACTATAGATGATGTACATCAATTCGTTACTAGGAGACTGGAGCAATTTCTGGTGGATAAAGGTACAAGTCCTGAAGTGGTTCATTCTATCCTTTCAGAGCGTGCAAATTGGCCATATTTGGCTACAAAATCAGCTGTTAAAATGGATGTCCTATCAAAGGGTGAGAATCTGCCAAAGGTCATTGAAGCTTATTCTCGTCCAACACGGATTATTCGTGGGAAGGTCATGGATACTGATTTGGAGGTCAGTGAATCTGCATTTGAAACAAAAGAAGAGAGAGCTTTATGGAATGCTTTCTTGTCAGTAAAGACCAAGATCCATCCTGGTGTGGAGATTGATGATTTTGTTGAATCATCTTTGGAACTACTACAGCCACTTGAGGATTTCTTTAACCATGTCTTTGTCATGGTGGAAGATGAGAGAGTCCGGAATAACAGACTTGCACTCCTCAAGAAAATTGCAGACCTTCCAAGAGGGATAGCAGACCTCTCTGTTTTGCCTGGGTTTTAG 3114 43.38 MVLLAFPLVLSALKPHGTHLALFYPGRRSPFHFCGPLRRHSCLRFSKTTVSAISTSAISQPPSKDPKPHTRTSVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLAALGIDVNAHDIRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQAGSLPLLPISVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHASVDNIQRHFEIFEEEARSLLSLGLAVPALARQCAQLWVKMRESLGHPLGIISEPSYVACPKDDLEKALRKVPEVPRSFILEIGTEEMPPQDVVDASQQLKDLIIQLLEKQRLNHGEVFTYGTPRRIVVLVDRLCPKQMENDIEVRGPPVAKAFDHQGNPTKAAEGFARKYGASLDSLFRKADGKTEYVYIRVKECDRIALEVLSEELPTIIGKISFLKSMRWNSEFMFSRPIRWILALHGNVVVPFVFAGIMSGSLSYGLRNTPSATMEVESAESYVGLMKKAGISVEIEKRKNTILECSTSLAESVGGHLVMQNSLLEEVVNLVEAPVPVLGSFKESFLELPNDLLVMVMQKHQKYFAITDNHGKLLPNFIAVANGAIDEMVVRRGNEAVLRARYEDAKFFYEMDTNKRFSEFRSQLKGILFHEKLGTMLDKMMRVQNIVTKLSLAMGIENDTLPAVQEAASLAMSDLATAVVTEFTSLSGIMARHYALRDGYSEQVAEALFEVTLPRFSGDLIPKTDVGMVLAVADRLDSLVGLFGVGCQPSSSNDPFGLRRISYGLVQVLVENDKNLDLRNALVVAADVQPIKMDANTIDDVHQFVTRRLEQFLVDKGTSPEVVHSILSERANWPYLATKSAVKMDVLSKGENLPKVIEAYSRPTRIIRGKVMDTDLEVSESAFETKEERALWNAFLSVKTKIHPGVEIDDFVESSLELLQPLEDFFNHVFVMVEDERVRNNRLALLKKIADLPRGIADLSVLPGF 1037
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00536 1037 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 710 999 IPR006194 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro)
Nenu1g00536 1037 Pfam Glycyl-tRNA synthetase alpha subunit 77 307 IPR002310 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro)
Nenu1g00536 1037 SUPERFAMILY HD-domain-PDEase-like 683 816 - -
Nenu1g00536 1037 MobiDBLite consensus disorder prediction 54 73 - -
Nenu1g00536 1037 PRINTS Glycyl-tRNA synthetase alpha subunit signature 207 227 IPR002310 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro)
Nenu1g00536 1037 PRINTS Glycyl-tRNA synthetase alpha subunit signature 181 205 IPR002310 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro)
Nenu1g00536 1037 PRINTS Glycyl-tRNA synthetase alpha subunit signature 129 144 IPR002310 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro)
Nenu1g00536 1037 PRINTS Glycyl-tRNA synthetase alpha subunit signature 150 170 IPR002310 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro)
Nenu1g00536 1037 PRINTS Glycyl-tRNA synthetase alpha subunit signature 230 245 IPR002310 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro)
Nenu1g00536 1037 NCBIfam glycine--tRNA ligase subunit beta 356 1034 IPR015944 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro)
Nenu1g00536 1037 Gene3D Bira Bifunctional Protein; Domain 2 63 278 IPR045864 -
Nenu1g00536 1037 Pfam Glycyl-tRNA synthetase beta subunit 356 899 IPR015944 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro)
Nenu1g00536 1037 SUPERFAMILY Class II aaRS and biotin synthetases 76 321 IPR045864 -
Nenu1g00536 1037 Hamap Glycine--tRNA ligase beta subunit [glyS]. 353 1034 IPR015944 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro)
Nenu1g00536 1037 FunFam Glycine--tRNA ligase alpha subunit 69 278 - -
Nenu1g00536 1037 Pfam DALR anticodon binding domain 929 1022 IPR008909 GO:0004814(InterPro)|GO:0005524(InterPro)|GO:0006420(InterPro)
Nenu1g00536 1037 PANTHER GLYCYL-TRNA SYNTHETASE 76 1037 IPR006194 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0005739(PANTHER)|GO:0006426(InterPro)|GO:0009570(PANTHER)
Nenu1g00536 1037 ProSiteProfiles Heterodimeric glycyl-transfer RNA synthetases family profile. 76 300 IPR006194 GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00536 K14164 glycyl-tRNA synthetase [EC:6.1.1.14]
Nenu1g00536 K01879 glycyl-tRNA synthetase beta chain [EC:6.1.1.14]