AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00603 ATGGGATTTTCTAGACTAGCCCACGCCCATCTTCAAAACTATCACTTTCCACAAAACCCTTTTCTCTCCATCCTTGGCCATGGCTTTGGTGTTTCAACATTTCTTAAGCTGCTGCCAAGCAAGAAGTGTCTAGCTTCCTCAACCATTACGACCAGGCCTGTGGTGAGAGCACTTGCAACTCAAGCAGCAATCATGGTGAAGGCGATCAGAGTTTATGAACATGGCGGACCAGAGGTCCTGAAGTGGGAGGATGTGGAAATAGGAGAACCAAAAGAGGGTGAGATCCGTGTGCGAAACAAGGCGATCGGACTCAACTTCATTGATGTTTATTTCCGCAAAGGAGTTTATAAACCTTCTACAATGCCCTTTACTCCAGGCATGGAGGCAGTTGGAGTAGTAACTGCTGTGGGTCCTGGATTGACAGGTACAAAAGTTGGGGATCTTGTTGCCTATGCAGGTAATCCAATGGGATCTTACACTGAAGAACAGATCCTTCCTGCTGATGTTGCTGTGCCAGTCCTGCCTTCTATAGAGCCTACTGTTGCAGCATCTGTCATGCTTAAAGGGATGACTGCTTGGTTCCTACTCCACCGTTGCTTCAAGGTCGAACATGGACACAAAATTCTTGTTCATGCAGCAGCTGGAGGAGTTGGATCCTTATTGTGCCAGTGGGCAAATGCTCTTGGAGCCACTGTTATTGGCACTGTGTCAACTGAGGAGAAGGCAGCCCAAGCCAAGGAACATGGATGCCACCATGTCATAATCTACACGCAAGATGATTTTGTTTCTATAGTCAACAAAATAACATCGGGCAAAGGAGTTGATGTTGTCTATGATTCTGTTGGCAAAGATACATTCCAGGGATCACTGGAGTGTTTAAAGACTCGGGGGTACATGGTGAGCTTCGGACAATCGTCTGGCACACCGGATCCAGTTCCATTGTCAGCCCTTGCTGTTAAATCCTTGTTCTTGACGAGGCCTTCGCTCATGCAGTATACTAAAACTTGGGATGAACTGTTGGAAGCTGCCGGAGCAGTGTTCACTAACATTGCATCAGGTGTCTTACAGGCCCGGGTCAACCATACATACCCCTTGTCACAGGCTGCACAGGCTCATGCAGACCTTGAGAATCGAAAAACAACTGGTTCTGTAGTGTTGATACCAGATGGTGCAGCCCAGGATGTTCCAGGGAATAAAATCTTATTCGGGGACCTAAGCCTTACTACCATCCCAACATCACCTGACACTGCACATCTTTCCACACTCAAAACGAAGAGCGAACCTAGAGAAGCCAGTGAAAAGAATCGGAAAGTGCACCGTTGCGACTGGACCCATCTTACATTTGGAGGAGTCCATTCCATTTCCAACAGAAACCAAGATCCAAAAATGGAACATGGGAGAGAAGAGGAGTTGTCTTTGATTGAAAATGATAGAGATTATGGTTATCCCATCAATGGAGGAAACCTGGATAATATCAGAGGGGATGGTGGATAA 1494 46.72 MGFSRLAHAHLQNYHFPQNPFLSILGHGFGVSTFLKLLPSKKCLASSTITTRPVVRALATQAAIMVKAIRVYEHGGPEVLKWEDVEIGEPKEGEIRVRNKAIGLNFIDVYFRKGVYKPSTMPFTPGMEAVGVVTAVGPGLTGTKVGDLVAYAGNPMGSYTEEQILPADVAVPVLPSIEPTVAASVMLKGMTAWFLLHRCFKVEHGHKILVHAAAGGVGSLLCQWANALGATVIGTVSTEEKAAQAKEHGCHHVIIYTQDDFVSIVNKITSGKGVDVVYDSVGKDTFQGSLECLKTRGYMVSFGQSSGTPDPVPLSALAVKSLFLTRPSLMQYTKTWDELLEAAGAVFTNIASGVLQARVNHTYPLSQAAQAHADLENRKTTGSVVLIPDGAAQDVPGNKILFGDLSLTTIPTSPDTAHLSTLKTKSEPREASEKNRKVHRCDWTHLTFGGVHSISNRNQDPKMEHGREEELSLIENDRDYGYPINGGNLDNIRGDGG 497
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00603 497 SUPERFAMILY GroES-like 64 209 IPR011032 -
Nenu1g00603 497 Pfam Zinc-binding dehydrogenase 216 341 IPR013149 -
Nenu1g00603 497 Gene3D - 188 332 - -
Nenu1g00603 497 Gene3D - 75 382 - -
Nenu1g00603 497 FunFam Quinone oxidoreductase 1 188 332 - -
Nenu1g00603 497 PANTHER QUINONE OXIDOREDUCTASE PIG3-RELATED 67 388 - GO:0003960(PANTHER)|GO:0005829(PANTHER)|GO:0016651(PANTHER)|GO:0017091(PANTHER)|GO:0070402(PANTHER)
Nenu1g00603 497 SMART PKS-ER-names-mod 75 386 IPR020843 GO:0016491(InterPro)
Nenu1g00603 497 CDD QOR2 67 388 IPR047618 GO:0003960(InterPro)
Nenu1g00603 497 MobiDBLite consensus disorder prediction 422 437 - -
Nenu1g00603 497 MobiDBLite consensus disorder prediction 418 437 - -
Nenu1g00603 497 Pfam Alcohol dehydrogenase GroES-like domain 92 172 IPR013154 -
Nenu1g00603 497 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 179 339 IPR036291 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00603 K00344 NADPH:quinone reductase [EC:1.6.5.5]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:16753446 Nenu6g01076 Nenu-Chr6:37099583 wgd