AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00613 ATGAGCTACTTGCAGAGGCTCAAAGCAGCGGCCCAGTTCATCCTCTCGAGAGACCTAGACGTCGAGAAGTCGTCGCCATTAGATGGTGCTGAGTTTGGGGTTACGGCATCACTGAAACCTCATCAGGTGGAAGGAGTCTTGTGGCTTATACGTAGATATATTCTTGGCGTCAATGTCATTCTCGGTGACGAGATGGGTCTTGGGAAGACTTTGCAAGCTCTTACTTTCTTGAGCTACTTGAAGGTTCGCCAGATGTCACCTGGACCATTTTTGGTTTTGTGTCCTCTAAGTGTGACTGATGGTTGGGTGTCAGAGATAGCCAACTTTTGTCCAAAATTAAGGGTTCTTAGATATGTTGGTGACAAAGAATTTCGGTGCAGTCAACGCAAGACAGTTTATGAACATGTAAAACAACAATCCTCATTGTTAGATGCACAATCAGCTTTTCCTTTTGATGTGTTTTTGACAACATATGACATTGCATTGATGGATCAAGATTTTCTTTCTCAAGTTCCTTGGCACTATGCAATCATTGACGAAGCTCAGAGACTTAAAAATCCTTCAAGTGTTCTGTACGATGTACTTGAACAGCGTTTTGTTATGCCAAGACGATTATTGTTGACGGGAACTCCTATCCAAAACAACCTCTCTGAGCTCTGGGCTCTAATGCATTTTTGTATGCCATCGGTCTTTGGGACATCAGAACAATTCCTCTCCACATTTAAGGAAGCTGGGGATCCTTCAGCAGGTCATGATGCAGTCAAGGTTAAGGAAAAATTCAAAACTCTAAAATATATATTGGGGGCATTTATGCTTCGGCGAACCAAATCCATGCTTATTGAGTGTGGAACTCTTGAGCTACCTCCTCTTACAGAGATTACTGTGATGGCACCTTTAGTAACCTTGCAAAAGAAGGTCTACATGTCAATATTGCGGAGGGAGCTTTCTAAACTTCTTGCTTTCTCTTCTGGGGCATCTAATCATCAATCCTTACAAAATATTGTAATTCAATTGCGGAAGGCATGTAGCCATCCTTACCTCTTTCCTGGTATTGAACCAGAACCATACAAGGAGGGTGAACATCTTGTACAGGCTAGTGGTAAACTTATAATTTTGGACAAACTGCTTCAGAAGCTGCATGCTTCTGGACACCGAGTTCTGCTATTTGCTCAGATGACTCATACACTTGATATTCTTCAGGATTTTCTGGAGTTACGAGGGTATACATATGAACGTCTTGATGGATCTATTAGGGCTGAGGAGCGCTTTGCAGCAATAAGAAGTTTTAGTCATCAATCAGTTAAAGACACATTTAATGCTCAAGCTGATCAACATGGTGCATTTGTTTTTATGATCTCAACAAGAGCAGGGGGAGTTGGTCTAAACCTTGTCGCTGCTGATACTGTTATATTTTATGAGCAAGACTGGAATCCCCTAGTGGACAAGCAGGCTCTGCAGCGTGCTCACCGAATTGGTCAGATGAACCATGTCCTATCTATAAATCTAGTAACAGAGCGCACAGTGGAGGAGGTAATTATGAGGAGAGCAGAGAGAAAGTTGCAGCTCATCCATAATGTGGTAGGAGATTATGACATGGACAAGGAAGGAAAAACAGTGGGAGTTGAAGCTGGTGATTTGCAGTCTGTCATATTTGGATTACATATGTTTGACCCTACAGATATCAATGTTGATAATTTAAAGGAGGTCAATACATCGGATTTGAGTACAATGGTTGAACAGGTGACTGAAATGCGCTATGAACCATTGGACAGTGATGGTAGGAAATTTGTAATCAATCCAATGGATCTTCTGAATGGGGCTGATTTTTCAATTAGAACCACTTCATCTATTGATTTTGATCCTGGGCTTGATGAGGCCTCATATCTTTCATGGGTTGAAAAGTTTAAGGAAGCATCAAAGTTGATTGATTCTCCAACTATAGAGTTGCGAGCACAGAGAAACTTACCTGAAGAAAAACATATGAAGCTTGAAGCTGCAAGGAAGAAAGCTGAGGAAAAGAAGTTAGCCAAGTGGGAGGCACTTGGTTACCAATCACTAGCTGTCAAAGGTCCTGCTTGTCCTATGGTTGGTGACATTATGCCAGATTCAGGTTCTGTCCAATTTGTTTATGGAGATTGTACAGATCCATCAAAAGTGTGTCCGTCTGAGCCTGCAATAATATTTAGTTGTATAGATAACTCTGGTAATTGGGGCCATGGAGGAATGTTTGATGCACTAGAAAAACTTTCAGCAAGTATTCCTGATGCTTATCGGCGTGCTTTCGAATTTGGGGACCTTCATTTGGGTGATCTCCATCTTATAAAACTCAATGAAGATCATGAAGAGACAGCAGATCAAAAGCCTTCTTGGTGGGTGGCTTTAGCTGTTGTACAGTCGTACAATTCTAGACATAAAGTGCGATGCAGCAATATTTCTTTACCTGACTTAGAACAATGTTTATCCAAGGCATCTTACTCAGCTGCTCAGAATTCTGCATCAATCCATATGCCACGAATTGGTTATCAAGATGGATCTCAACATTCGGAGTGGTACACAGTGGAACGTCTTTTACGAAAATATGCATCTGTATACAGCATAAGAATTTTTGTGTATTACTTCCGACGTTCTTCATGA 2634 41.38 MSYLQRLKAAAQFILSRDLDVEKSSPLDGAEFGVTASLKPHQVEGVLWLIRRYILGVNVILGDEMGLGKTLQALTFLSYLKVRQMSPGPFLVLCPLSVTDGWVSEIANFCPKLRVLRYVGDKEFRCSQRKTVYEHVKQQSSLLDAQSAFPFDVFLTTYDIALMDQDFLSQVPWHYAIIDEAQRLKNPSSVLYDVLEQRFVMPRRLLLTGTPIQNNLSELWALMHFCMPSVFGTSEQFLSTFKEAGDPSAGHDAVKVKEKFKTLKYILGAFMLRRTKSMLIECGTLELPPLTEITVMAPLVTLQKKVYMSILRRELSKLLAFSSGASNHQSLQNIVIQLRKACSHPYLFPGIEPEPYKEGEHLVQASGKLIILDKLLQKLHASGHRVLLFAQMTHTLDILQDFLELRGYTYERLDGSIRAEERFAAIRSFSHQSVKDTFNAQADQHGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPLVDKQALQRAHRIGQMNHVLSINLVTERTVEEVIMRRAERKLQLIHNVVGDYDMDKEGKTVGVEAGDLQSVIFGLHMFDPTDINVDNLKEVNTSDLSTMVEQVTEMRYEPLDSDGRKFVINPMDLLNGADFSIRTTSSIDFDPGLDEASYLSWVEKFKEASKLIDSPTIELRAQRNLPEEKHMKLEAARKKAEEKKLAKWEALGYQSLAVKGPACPMVGDIMPDSGSVQFVYGDCTDPSKVCPSEPAIIFSCIDNSGNWGHGGMFDALEKLSASIPDAYRRAFEFGDLHLGDLHLIKLNEDHEETADQKPSWWVALAVVQSYNSRHKVRCSNISLPDLEQCLSKASYSAAQNSASIHMPRIGYQDGSQHSEWYTVERLLRKYASVYSIRIFVYYFRRSS 877
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00613 877 Gene3D - 285 588 IPR027417 -
Nenu1g00613 877 FunFam Putative helicase CHR10 285 593 - -
Nenu1g00613 877 Gene3D - 19 284 IPR038718 -
Nenu1g00613 877 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 30 875 IPR031053 GO:0003678(InterPro)|GO:0006281(InterPro)|GO:0006338(InterPro)
Nenu1g00613 877 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 540 IPR001650 -
Nenu1g00613 877 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 229 IPR014001 -
Nenu1g00613 877 CDD SF2-C-SNF 360 503 IPR049730 -
Nenu1g00613 877 SUPERFAMILY Macro domain-like 706 872 IPR043472 -
Nenu1g00613 877 Pfam SNF2-related domain 41 347 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Nenu1g00613 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 533 IPR027417 -
Nenu1g00613 877 Gene3D Leucine Aminopeptidase, subunit E, domain 1 705 877 IPR043472 -
Nenu1g00613 877 SMART helicmild6 397 492 IPR001650 -
Nenu1g00613 877 SMART ultradead3 34 237 IPR014001 -
Nenu1g00613 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 274 IPR027417 -
Nenu1g00613 877 CDD Macro-Poa1p-like-SNF2 705 864 - -
Nenu1g00613 877 Pfam Helicase conserved C-terminal domain 368 492 IPR001650 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00613 K20092 chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:17290209 Nenu3g00496 Nenu-Chr3:11320841 dispersed
Nenu Nenu-Chr1:17290209 Nenu4g00519 Nenu-Chr4:12955074 transposed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nenu1g00457 . 215 673 DDM1 gene family AT5G66750 23.782 2.17e-24 108.0
Nenu1g00613 . 200 674 DDM1 gene family AT5G66750 37.378 1.49e-93 310.0
Nenu1g01091 . 196 645 DDM1 gene family AT5G66750 40.638 1.11e-96 326.0
Nenu1g01629 . 196 726 DDM1 gene family AT5G66750 44.507 8.25e-129 409.0
Nenu1g03368 . 131 764 DDM1 gene family AT5G66750 67.241 0.0 854.0
Nenu1g04076 . 201 656 DDM1 gene family AT5G66750 23.121 4.50e-17 84.3
Nenu1g06193 . 137 660 DDM1 gene family AT5G66750 28.75 3.72e-62 224.0
Nenu2g00877 . 202 659 DDM1 gene family AT5G66750 25.572 2.82e-23 106.0
Nenu2g01428 . 190 724 DDM1 gene family AT5G66750 39.298 3.51e-101 342.0
Nenu2g02485 . 207 659 DDM1 gene family AT5G66750 25.105 1.91e-24 110.0
Nenu2g02786 . 224 714 DDM1 gene family AT5G66750 24.64 7.01e-23 103.0
Nenu2g03451 . 76 513 DDM1 gene family AT5G66750 35.052 7.66e-74 261.0
Nenu3g00496 . 11 739 DDM1 gene family AT5G66750 38.658 3.00e-148 460.0
Nenu3g00538 . 197 726 DDM1 gene family AT5G66750 41.049 2.36e-113 379.0
Nenu3g01515 . 138 677 DDM1 gene family AT5G66750 30.465 3.41e-71 252.0
Nenu3g03460 . 166 673 DDM1 gene family AT5G66750 31.071 4.65e-66 238.0
Nenu4g00323 . 196 726 DDM1 gene family AT5G66750 43.762 2.16e-128 408.0
Nenu4g00519 . 58 739 DDM1 gene family AT5G66750 39.508 1.29e-146 456.0
Nenu4g00936 . 195 667 DDM1 gene family AT5G66750 25.255 7.92e-29 120.0
Nenu4g01263 . 202 504 DDM1 gene family AT5G66750 34.251 6.03e-46 174.0
Nenu5g01006 . 195 506 DDM1 gene family AT5G66750 39.172 3.04e-69 248.0
Nenu5g01134 . 148 660 DDM1 gene family AT5G66750 30.319 1.88e-68 243.0
Nenu5g02486 . 202 678 DDM1 gene family AT5G66750 27.916 2.14e-54 201.0
Nenu6g00710 . 196 645 DDM1 gene family AT5G66750 41.489 1.67e-98 335.0
Nenu7g00477 . 76 513 DDM1 gene family AT5G66750 35.876 1.77e-74 263.0
Nenu7g00554 . 197 726 DDM1 gene family AT5G66750 40.0 1.15e-108 364.0
Nenu7g01682 . 197 681 DDM1 gene family AT5G66750 38.6 9.36e-91 312.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Nenu SNF2_N 1.9e-49 CL0023 TR SNF2