AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nenu1g00647 | ATGTTCTTATTTTTCAGTTATTTCTCCCTCCTCTTCTTCCTCTTCCCTCCCTGTTCTCCCGCCAGAATCGCACCTGGCTTCACACCACCGGAATCTATAACAGTTTTAACTGTCAACGGTACCAACGATACATGGCACAATTTAGCGAGGTTTCTGGACTCCAGCAAGGGAAGCCACGTCAGCGGCATGTCGGAACTCAAGAAATACTTTCACCGCTTCGGTTATCTCCCCGTCTCCGATATCGACTTCACCGATACGTTTGACGCTCGGTTTGAATCCGCCGTGATTGAGTACCAATCCAAACTTGGCCTGCCCGTCACGGGCAAGCTCGATTCCAATACGCTTTCGCAGATTATGTCGCCGAGGTGCGGCGTGCGAGACACAGGACACGTTACTCAGTTTCATGCGACTCGACGGTATGCATACTTCTCCGGACAGCCGAGGTGGGTGCGCAAGACTCCTGTAACGCTCACGTACGCGTTCTCGCCGGAGAATACTATATCGTACTTGACCACGGAGGAGATACGGGCAGTAGTTGATCGAGCTTTTACGAGGTGGGCAGCCGTAATACCACTGAGATTCTCGGAGATAGAAGATTACGTATCGGCAGACATTAAAATCGGGTTCTATGGTGGAGATCACGGTGACGGAGAGCCGTTCGATGGGGTGCTGGGAGTGCTGGCACACGCCTTCTCCCCTACGAGCGGGAAGCTCCACTTTGATGCTGCGGAGAGGTGGGCGGTTGATTTTGGGGTGGATAGATCGAAGGTTGCCGTTGATTTGGAATCGGTGGCGACACACGAAATAGGGCACGTATTGGGGCTGGCCCACTCTTCCGTTAAGGAAGCAATTATGTATCCTAACTTATCACCCAGAAACAAGAAGGTGGAGCTGAAGCTGGATGACGTGAAGGGGGTGCAAGCTCTGTATGGCTCCAATCCAAACTTCAGTTTAAGCGCCTTATTGGCATCTGATACTTCTACCAATCAAGCCGTTGGTTCAAGAATCAGAACCTCCTCCAAGTGGGCCACCTCTATCTTGGTTTTGGCATCCTCGTTGTGGTGGTGCTGGTGCATATAA | 1080 | 51.57 | MFLFFSYFSLLFFLFPPCSPARIAPGFTPPESITVLTVNGTNDTWHNLARFLDSSKGSHVSGMSELKKYFHRFGYLPVSDIDFTDTFDARFESAVIEYQSKLGLPVTGKLDSNTLSQIMSPRCGVRDTGHVTQFHATRRYAYFSGQPRWVRKTPVTLTYAFSPENTISYLTTEEIRAVVDRAFTRWAAVIPLRFSEIEDYVSADIKIGFYGGDHGDGEPFDGVLGVLAHAFSPTSGKLHFDAAERWAVDFGVDRSKVAVDLESVATHEIGHVLGLAHSSVKEAIMYPNLSPRNKKVELKLDDVKGVQALYGSNPNFSLSALLASDTSTNQAVGSRIRTSSKWATSILVLASSLWWCWCI | 359 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nenu1g00647 | 359 | Pfam | Putative peptidoglycan binding domain | 63 | 117 | IPR002477 | - | |
| Nenu1g00647 | 359 | FunFam | Metalloendoproteinase 1 | 53 | 316 | - | - | |
| Nenu1g00647 | 359 | Gene3D | Collagenase (Catalytic Domain) | 51 | 317 | IPR024079 | GO:0008237(InterPro) | |
| Nenu1g00647 | 359 | SUPERFAMILY | Metalloproteases (zincins), catalytic domain | 143 | 314 | - | - | |
| Nenu1g00647 | 359 | PANTHER | MATRIX METALLOPROTEINASE | 10 | 342 | - | GO:0004222(PANTHER)|GO:0030198(PANTHER)|GO:0030574(PANTHER) | |
| Nenu1g00647 | 359 | PRINTS | Matrixin signature | 118 | 131 | IPR021190 | GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro) | |
| Nenu1g00647 | 359 | PRINTS | Matrixin signature | 203 | 231 | IPR021190 | GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro) | |
| Nenu1g00647 | 359 | PRINTS | Matrixin signature | 298 | 311 | IPR021190 | GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro) | |
| Nenu1g00647 | 359 | PRINTS | Matrixin signature | 264 | 289 | IPR021190 | GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro) | |
| Nenu1g00647 | 359 | PRINTS | Matrixin signature | 179 | 194 | IPR021190 | GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro) | |
| Nenu1g00647 | 359 | SMART | col-5 | 145 | 312 | IPR006026 | GO:0006508(InterPro)|GO:0008237(InterPro)|GO:0008270(InterPro) | |
| Nenu1g00647 | 359 | Pfam | Matrixin | 149 | 311 | IPR001818 | GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)|GO:0031012(InterPro) | |
| Nenu1g00647 | 359 | CDD | ZnMc-MMP | 148 | 311 | IPR033739 | GO:0008237(InterPro)|GO:0008270(InterPro) | |
| Nenu1g00647 | 359 | SUPERFAMILY | PGBD-like | 56 | 128 | IPR036365 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nenu1g00647 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nenu | Nenu-Chr1:18155026 | Nenu3g03444 | Nenu-Chr3:96717001 | dispersed | |
| Nenu | Nenu-Chr1:18155026 | Nenu4g02406 | Nenu-Chr4:74446490 | transposed |