AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00656 ATGAGAAACGAGGAAGTCAGATTATATAGTGGTTCCAAGCTGCCCCTTCTGGGATTCGGCACGGCTGCATTCCCTTATGATAGAGAAAGAGTCGAGCTTGCAATATGGACGGCCCTCAAGATGGGTTATCGCCATTTCGACACTGCAAAGATATATGGTTCGGAACCTGCCGTGGGTAGTGCTTTAATGGAGGCAATTCATGATGAGGCAGTGAGCAGAGAAGAAATTTTTGTTACTTCTAAGCTATGGGGATCTGATCACCATGACCCTATTTCCGGACTCAAGCAAACTCTCAAGAACCTAGGGATGGAATATGTGGACCTGTACCTGATACATTGGCCAGCCAAACTAAAGGTGTGGGCAAATTATGCTGTACCTAATGAAGATGACTTTGAAGAGTTGGACATGGAGTCTACTTGGGCAGGGATGGAGAGGTGCTTGGATATGGGGCTTTGCAGGTTCATTGGGGTAAGCAATTTCTCTTGCCGGAAGATCCAACGACTAATGGAACACGCTTCTGTCCTTCCTGCAGTGAATCAGGTGGAGATGCATCCCATGTGGAGGCAGAAGAAGCTCAGAGAATTTTGTGGGGAGAAAAATATCCATGTGAGCGCTTATTCACCTCTTGGAGGGCCAGGGAGTCCATGGGGAACAAAGGCCGTGGTGGATAACCCTGTCATATGTTCCATTGCGCGTAAACACAAAGCAACCCCAGCTCAGGTTGCTCTAAGTTGGGGCTTATCTAAAGGAGTGAGTCTGATTATAAAAAGCTTCAATCAAGAGAGGATGAAGGAGAACATGGAGGCTCTAGAGCTGACACTGGACCACGAGGATGTCGTCAAGATTGAGAGATTAGAAGAGAAGAAGATCATGAGAGGTGAATTTCTTGTTAATGGAACCACAAGCCCATACAGGACAATTCAAGATCTGTGGGATGACGAGATCTAA 948 46.62 MRNEEVRLYSGSKLPLLGFGTAAFPYDRERVELAIWTALKMGYRHFDTAKIYGSEPAVGSALMEAIHDEAVSREEIFVTSKLWGSDHHDPISGLKQTLKNLGMEYVDLYLIHWPAKLKVWANYAVPNEDDFEELDMESTWAGMERCLDMGLCRFIGVSNFSCRKIQRLMEHASVLPAVNQVEMHPMWRQKKLREFCGEKNIHVSAYSPLGGPGSPWGTKAVVDNPVICSIARKHKATPAQVALSWGLSKGVSLIIKSFNQERMKENMEALELTLDHEDVVKIERLEEKKIMRGEFLVNGTTSPYRTIQDLWDDEI 315
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00656 315 PRINTS Aldo-keto reductase signature 143 160 IPR020471 GO:0016491(InterPro)
Nenu1g00656 315 PRINTS Aldo-keto reductase signature 38 62 IPR020471 GO:0016491(InterPro)
Nenu1g00656 315 PRINTS Aldo-keto reductase signature 221 245 IPR020471 GO:0016491(InterPro)
Nenu1g00656 315 PRINTS Aldo-keto reductase signature 96 114 IPR020471 GO:0016491(InterPro)
Nenu1g00656 315 PRINTS Aldo-keto reductase signature 177 206 IPR020471 GO:0016491(InterPro)
Nenu1g00656 315 FunFam NADPH-dependent codeinone reductase 1-1 3 315 - -
Nenu1g00656 315 ProSitePatterns Aldo-keto reductase family signature 1. 42 59 IPR018170 GO:0016491(InterPro)
Nenu1g00656 315 ProSitePatterns Aldo-keto reductase family putative active site signature. 254 269 IPR018170 GO:0016491(InterPro)
Nenu1g00656 315 Pfam Aldo-keto reductase family 17 286 IPR023210 -
Nenu1g00656 315 PIRSF AKR 1 309 IPR020471 GO:0016491(InterPro)
Nenu1g00656 315 Gene3D - 3 315 IPR036812 -
Nenu1g00656 315 SUPERFAMILY NAD(P)-linked oxidoreductase 8 288 IPR036812 -
Nenu1g00656 315 PANTHER ALDO-KETO REDUCTASE 5 289 IPR020471 GO:0004032(PANTHER)|GO:0005829(PANTHER)|GO:0016491(InterPro)
Nenu1g00656 315 ProSitePatterns Aldo-keto reductase family signature 2. 143 160 IPR018170 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00656 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:18370792 Nenu4g01393 Nenu-Chr4:51390869 dispersed
Nenu Nenu-Chr5:36283945 Nenu1g00656 Nenu-Chr1:18370792 transposed
Nenu Nenu-Chr1:18370792 Nenu6g01128 Nenu-Chr6:38459639 wgd