AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00658 ATGACGTATTCAACAGGAAGAAACCCTAAACCATTCAAGAGGTCTTCGAACTGGACTGACCTCTGGTTCAAGTACAAAACTCTCAAGCATAAGCATGTTGTTTTCAAGATGCAGCTCCCATCTCTCAACGCAGCGGCAGCAGCAAAAAATGAGAAACATCCAGCGAAAAACCGAAGCTTAGGCTCTTCCAAGGATCTAACCTCTCTCTTATCCGACGAGCTTCTCCTTCGAATCTTCTCCAAGCTTCCTGACTCACAAAGAAACCCTAATTCGCTTGTATGCAAGCGATGGCTAGCTCTCCAGGGACGTCTTGTTCGCTCCGTTAAGCTCCTCGATTGGAGTTTCCTTGAATCTGGTCGCCTTGTTTCTCGTTTCCCTAATCTTACTGATATTGATCTTGTCACAGCTTGCATTTGTAGGCCCAGGAATTCTGGAATATTTCTATCCCACAAATTCATATCCTTTCATCTTGACTCTGGTTTCTCTCCCGGTGGGTTTATCCACGGGGAGAATTTACTGTCGCCAGAGGCAATTGATCGAGGGCTACGAGTTATTTCCCGCGGATGCCCTAATCTTCGGAAGCTTGCATTAATCAGTGCCACTGAAACGGGGTTGGAAAGCGTCGCTGAGGAGTGCCCGACTTTGCAAGAACTAGAGCTGCACCGGTGCACTGATCTCACGCTGCGTGGGATTGCCGCCTGCCAGAACCTTCAGATCTTGAATTTGATTGGAAGTGTCGATGGTTTTTACAATTCTGTGGTTTCGGATATTGGCCTTACTATCTTGGCACACGGGTGCAAGCGGCTTGTGAAACTTGAGCTGAGTGGGTGTGAAGGGAGCTACGACGGGATCAAAGCTATTGGGCAATGCTGCCACATGCTGGAGGAACTCACGCTGTGCGACCACAGGATGGATGCAGGGTGGATGGCTGCATTATCATTCTGTGGGAATCTGAAGACATTGAGGCTTAAGTCGTGCAAAAAGATTGATCCGAACCCCGGACCAGTTGAACATTTGGGGTCTTGCCCTACCCTTGAACGGTTGCATCTGCAGAATTGCCAAGTCCGGGATCAGCAGAGCATGAAATCATTGTTTATCGTATGCGAGGCTGTTAGAGAGATCATGTTTCAGAATTGTTGGGGCTTGGACAATGACATGTTCTCCTTTGCCAGCACTTGCAGGAGGGTAAAGTATCTATCTTTGGAAAGATGCTCGTTGCTGACAACAGATGGTCTGGAATCAGTGGTTCTTTCTTGGAAGGAGCTTCAAAGGCTTAGAGTGGTCTCATGTAACAATATAAAGGACAATGAAGTCACTCCTGCACTGTCAAGCTTGTTTTCTGTGCTCAAGGAGTTAAAATGGCGACCAGATTCCCGATCTCTTTTTTCAACCCTTTCAGCAACAGGAGTGGGAAAGAAAGGTGGTAAATTTTTCAAGAGGGTATGA 1446 47.16 MTYSTGRNPKPFKRSSNWTDLWFKYKTLKHKHVVFKMQLPSLNAAAAAKNEKHPAKNRSLGSSKDLTSLLSDELLLRIFSKLPDSQRNPNSLVCKRWLALQGRLVRSVKLLDWSFLESGRLVSRFPNLTDIDLVTACICRPRNSGIFLSHKFISFHLDSGFSPGGFIHGENLLSPEAIDRGLRVISRGCPNLRKLALISATETGLESVAEECPTLQELELHRCTDLTLRGIAACQNLQILNLIGSVDGFYNSVVSDIGLTILAHGCKRLVKLELSGCEGSYDGIKAIGQCCHMLEELTLCDHRMDAGWMAALSFCGNLKTLRLKSCKKIDPNPGPVEHLGSCPTLERLHLQNCQVRDQQSMKSLFIVCEAVREIMFQNCWGLDNDMFSFASTCRRVKYLSLERCSLLTTDGLESVVLSWKELQRLRVVSCNNIKDNEVTPALSSLFSVLKELKWRPDSRSLFSTLSATGVGKKGGKFFKRV 481
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00658 481 Gene3D Ribonuclease Inhibitor 358 467 IPR032675 -
Nenu1g00658 481 SUPERFAMILY F-box domain 58 120 IPR036047 GO:0005515(InterPro)
Nenu1g00658 481 PANTHER UNCHARACTERIZED 68 452 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Nenu1g00658 481 FunFam F-box protein At5g51380 63 330 - -
Nenu1g00658 481 SMART LRR-CC-2 189 211 IPR006553 -
Nenu1g00658 481 SMART LRR-CC-2 315 342 IPR006553 -
Nenu1g00658 481 SMART LRR-CC-2 212 237 IPR006553 -
Nenu1g00658 481 SMART LRR-CC-2 266 290 IPR006553 -
Nenu1g00658 481 SMART LRR-CC-2 393 418 IPR006553 -
Nenu1g00658 481 CDD F-box-AtTIR1-like 68 103 - -
Nenu1g00658 481 Gene3D - 65 103 - -
Nenu1g00658 481 Gene3D Ribonuclease Inhibitor 120 355 IPR032675 -
Nenu1g00658 481 SUPERFAMILY RNI-like 110 244 - -
Nenu1g00658 481 SUPERFAMILY RNI-like 250 450 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00658 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:18485034 Nenu6g01131 Nenu-Chr6:38548403 wgd