AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00669 ATGGCTTCTCCTCCATTTCAGGTGGAGGATCAGACGGATGTGGACTTCTTCAACAAGCTTGTTGACGAGGAGTTTGCCGTTACGGAATCTGGTGCTGAAGTTAATGATTCCGATGAGGTGAAAGCACTATCGAATTTGAGCATTTCCGAGGTTGGCACTGTATCAGAAGGTCCCGACGCCGAAGATGACGGTTTCGATAGAAAAGGGGAAATGCATTCTGATAACGTGATCGAAGCAAGTAATACCGTTGCCGGGGTGGATGTTGCATCGGATTCCACAACAATCGAGAACAGTGGATCCAGGGATGCGGGTTTTAAAGAGGTCCAGTGGAGTTCTTTTAACTCTGATTTGGCTCAGCATGGTGGCAGTGGGTTCGGATCATACTCGGACTTCTTTACTGAGTTGGGAGATGGATCAAGCGACCCATTTGAGAAGATGGAGAAGAATACAGAGATTGTTTCCAACACAATATCTAGCACTTCAGGGAATGTGGGTAGCAAATTGACTTCTTCAGTTAGTTCTGTGCAACATCAAGGGAGTCAAGTATATGGATCAGGGATGGAACAAACTACAGATGGGCAGGATATGTATAGCAGTCAATATTGGGAAAACCTCTATCCAGGCTGGAAATATAATCCAAATACTGGGGAATGGCATCAAGTGGATGGTTCTGATGCAACAACAATGAATAGAGGGGGGGATTTTGAAGGTAACGCTCAGTCGATAGGTGATAATGTTGTTTTAGGCCAGAGATCAGAAGTTTCTTATTTGCAACAAACAGCTCAGTCAGTTGCAGGAACCATTGCTGAGAGTTGCACAACGGGTAGTGTCTCTAGCTGGAATCAGGCCTCTCAAGTGAGCACCGAGTACCCATCAAATATGGTATTTGATCCCCAGTATCCTGGTTGGTACTATGACACTATTGCCCAGGAATGGCGCTTGTTAGAGTCTTATGTTGCATCTGTTCAGTCAACAGGGACAGCTCATTACCAGACAAATGAACATGATAATGCTTTGACAGGTGATTTTCACTCCGAGAAAGACCGCAACCAGTACAGTGAGTATGGGCAAGTTGAAAAGTATGGATCACAAGTCTTCAGTGCTAAAGACCAAACTGGGGACTGGGCTGGGTCAATGAATAACTATGCTCATCAGAATATGAGTACATGGCAACCTACAGCTGTTGCTAAGACTGAGGCTGTAGCTGGTTTCGTTGAAAACCAGCAATCAAGGGATCTTTATAGTTCACCTGGTGAAGTAAATAACTATATGAATCAAGGAATGGGGTATAAACCCACAGGAACAGGTTCTTCGTATGAGCAGACAACGCGCAGTTATGGTGGTAGCAATGGGTTTACTGGGTTTCAAAATTTTACTCCTGACAACTTCTCCCAACAGTTTAAACAGACGAAGGTAGAGCAGAACCAACAGATGCAATCCTCACACAATTACTATGGCAGCCAGAAATCAGGGAACCTTTCCCAGCAACATTTCCATACAGGCACTCAGCCCCCCTATTCTCCTAATGAGGGGAGGTCATCTGCAGGACGTCCCCCCCATGCCCTGGTTACTTTTGGGTTTGGTGGAAAACTCATTGTCATGAAAAATAATTATTCTTTTGTTACTAATCCTGCATATGGAAGCCAGGACCCTATGGGAGGCTCAGTTTCTATTCTCAACTTGATGGGAGTTATCTTGGACAAAACTGATACCACAGGCATTGCATATGGCGTTTGTGATTACTTCCAGAGTCTGTGCCAGCAATCCTTCCCTGGCCCACTAGTTGGTGGGAATGTTGGAAATAAAGAATTAAATAAATGGATTGATGAGAGAATTGCAAGCTATGAATCCCCCAACATGGACTACAGAAAGGGCAAGCTTTTGAAGTTGCTTCTGTCTTTGCTAAAAATAGCTTGTCAGCACTATGGAAAACTTAGATCTCCTTTTGGAACTGACCCCACTTCGAAGGAAAATGATAGACCAGAATCAGCAGTTGCTAAGCTTTTTGCATCTGCTAAAAGGAATGATGCCCAAATAAGTGGATATGGAGCCATTGCTCACTGCTTGCAGAACCTTCCTTCTGAAGGACAAATACGGGCAACTGCTGTTGAGGTGCAAAACCTTCTTGTTTCCGGTAAGACAAAAGAGGCTCTCAAATGTGCACAAGAAGGTCAGTTGTGGGGACCTGCACTTGTTCTCGCAGCACAACTTGGAGACCAGTTTTATGTTGATACGGTGAAGCAAATGGCACATCGCCAATTAGTAGCAGGATCGCCATTACGAACATTATGTCTGCTAATTGCAGGACAACCAGCAGATGTGTTCTCCACAGTCAGCTCAAGTAGTGACCCACCTCTTGTTGAACATTTGCCACAACAGCCTTCCCAGATTGGAGCCAATGGTATGTTAGATGATTGGCAGGAAAATTTGGCCATCATAACTGCAAACCGAACAAAAGGTGATGAGCTTGTAATTATTCATCTTGGGGATTGCCTATGGAAGGAGAGATGTGAAATAATATCTGCACACACCTGCTACTTGGTTGCGGAAGCAAACTTTGAGTCATATTCTGACAGTGCAAGGTTGTGTCTTATTGGGGCAGACCACTGGAATTTCCCCCGAACCTATGCTAGTCCTGAGGCTATTCAGAGGACTGAACTGTATGAGTATTCAAAAGTGCTTGGAAATTCACAGTCTGTTCTGATACCGTTTCAACCATATAAGCTTATCTATGCCCACATGCTGGCTGAAGTTGGGAAACTTTCAGATTCATTGAAGTACTGTCAAGCAATATTGAAGTCTTTGAAAACTGGTCGTGCACCTGAAGTGGATAGTTGGAAGCAATTAGTATCATCTCTTGAGGAGCGCATAAGAACCCATCAACAGGGTGGATATGGCACAAACTTGGCTCCTGCAAAACTTGTAGGCAAATTACTTCCTTTTATTGATAGATCAATTCATCGCATGATTGGGGCCCCACCACCACCAGTCCAGTCAACTTCCCAGATTAACTCTCAAATTAATGAATATGATAACCACCCAACGGTTCCAAGAGTGGCAAACAGTCAATCAACAATGGCCATGTCTTCTTTAATTCCCTCAGCATCAATGGAGCCTATAAGTGAGTGGACAGGTGATAGCAATAGAAAGATAATACATAATAGAAGCATCTCAGAGCCGGACTTTGGTAGAAGCCCTAGACAGGGCCAGGTCAATCAATCAAAAGACATTGCCTCTGATGCTCAAAGCAAAGCATCGGTCTCTGGTGTGCCATCTCGTTTTGGACGTTTTGGATCACAGCTCCTACAAAAGACTATGGGGTGGGTCTCAAGATCCCGTACAGATCGACAGGCAAAATTGGGCGAAAGAAACAAATTCTATTATGATGAGAAGCTTAAGCGATGGGTGGAAGAAGGCACTGAACCTCCAGCTGAAGAAGCAGCCTTACCGCCCCCACCAAAAGCTTCTGCCTTCCAGAATGGAATGTCAGATTACAATATAAGAAATGCAATCAAGGGTGAAAATATGCTTTCTAATGGAACACCTGAAACCAAAACTCCAACTCCCTCAGAACGGAATGCAGGGATCCCACCCATCCCACCAAGCTCCAACCAATTCTCTGCTCGTGGACGTATGGGTGTTCGATCAAGATACGTTGACACCTTTAACAAGGGAGGTGCCTCCCCAGCCAACCTATTCCAGTCGCCTTCTGTTCCAGCTTCCAAAGCTGGAGGTGCCAATGCCAAGTTCTTTATTCCCACTCCTATTGCATCAGGAGAACAAACATTAAATACAACTGGTGAGGTCACACAAGAAGGCACTGAAGCCAATAACGATCCTTCAACATCTGTTATGAACGAGTCATCTATCCCATCTCCACCACCACCATCATCATCATCATCATCACGATTATCCAGGCAACGATTTCCAAGCATGAATAATATTGCTCCTATGGGAAACAAGGGAATGGAGAAGATGGGAAATGGAAAGGAGTCTCTTTCTCACCACTCACGGCGGGCAGCATCATGGGGTGGAAGCTTTAATGATACATTTAACGTGTCCAATACAGCAGACATAAAACCCCTAGGAGAGGCATTAGGAGTGCCACAATCATCCTGTGATCCATCACCAAAGCCCCTGCCAATAAATGGGAACAGTTTTGGAGATCTTCATGAAGTGGAATTGTGA 4188 44.63 MASPPFQVEDQTDVDFFNKLVDEEFAVTESGAEVNDSDEVKALSNLSISEVGTVSEGPDAEDDGFDRKGEMHSDNVIEASNTVAGVDVASDSTTIENSGSRDAGFKEVQWSSFNSDLAQHGGSGFGSYSDFFTELGDGSSDPFEKMEKNTEIVSNTISSTSGNVGSKLTSSVSSVQHQGSQVYGSGMEQTTDGQDMYSSQYWENLYPGWKYNPNTGEWHQVDGSDATTMNRGGDFEGNAQSIGDNVVLGQRSEVSYLQQTAQSVAGTIAESCTTGSVSSWNQASQVSTEYPSNMVFDPQYPGWYYDTIAQEWRLLESYVASVQSTGTAHYQTNEHDNALTGDFHSEKDRNQYSEYGQVEKYGSQVFSAKDQTGDWAGSMNNYAHQNMSTWQPTAVAKTEAVAGFVENQQSRDLYSSPGEVNNYMNQGMGYKPTGTGSSYEQTTRSYGGSNGFTGFQNFTPDNFSQQFKQTKVEQNQQMQSSHNYYGSQKSGNLSQQHFHTGTQPPYSPNEGRSSAGRPPHALVTFGFGGKLIVMKNNYSFVTNPAYGSQDPMGGSVSILNLMGVILDKTDTTGIAYGVCDYFQSLCQQSFPGPLVGGNVGNKELNKWIDERIASYESPNMDYRKGKLLKLLLSLLKIACQHYGKLRSPFGTDPTSKENDRPESAVAKLFASAKRNDAQISGYGAIAHCLQNLPSEGQIRATAVEVQNLLVSGKTKEALKCAQEGQLWGPALVLAAQLGDQFYVDTVKQMAHRQLVAGSPLRTLCLLIAGQPADVFSTVSSSSDPPLVEHLPQQPSQIGANGMLDDWQENLAIITANRTKGDELVIIHLGDCLWKERCEIISAHTCYLVAEANFESYSDSARLCLIGADHWNFPRTYASPEAIQRTELYEYSKVLGNSQSVLIPFQPYKLIYAHMLAEVGKLSDSLKYCQAILKSLKTGRAPEVDSWKQLVSSLEERIRTHQQGGYGTNLAPAKLVGKLLPFIDRSIHRMIGAPPPPVQSTSQINSQINEYDNHPTVPRVANSQSTMAMSSLIPSASMEPISEWTGDSNRKIIHNRSISEPDFGRSPRQGQVNQSKDIASDAQSKASVSGVPSRFGRFGSQLLQKTMGWVSRSRTDRQAKLGERNKFYYDEKLKRWVEEGTEPPAEEAALPPPPKASAFQNGMSDYNIRNAIKGENMLSNGTPETKTPTPSERNAGIPPIPPSSNQFSARGRMGVRSRYVDTFNKGGASPANLFQSPSVPASKAGGANAKFFIPTPIASGEQTLNTTGEVTQEGTEANNDPSTSVMNESSIPSPPPPSSSSSSRLSRQRFPSMNNIAPMGNKGMEKMGNGKESLSHHSRRAASWGGSFNDTFNVSNTADIKPLGEALGVPQSSCDPSPKPLPINGNSFGDLHEVEL 1395
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00669 1395 MobiDBLite consensus disorder prediction 1056 1094 - -
Nenu1g00669 1395 MobiDBLite consensus disorder prediction 467 519 - -
Nenu1g00669 1395 MobiDBLite consensus disorder prediction 51 70 - -
Nenu1g00669 1395 CDD ACE1-Sec16-like 590 961 - -
Nenu1g00669 1395 Pfam Sec23-binding domain of Sec16 705 985 IPR024298 -
Nenu1g00669 1395 MobiDBLite consensus disorder prediction 1175 1208 - -
Nenu1g00669 1395 MobiDBLite consensus disorder prediction 1269 1348 - -
Nenu1g00669 1395 MobiDBLite consensus disorder prediction 467 510 - -
Nenu1g00669 1395 Pfam Vesicle coat trafficking protein Sec16 mid-region 520 643 IPR024340 -
Nenu1g00669 1395 MobiDBLite consensus disorder prediction 1364 1395 - -
Nenu1g00669 1395 MobiDBLite consensus disorder prediction 1299 1314 - -
Nenu1g00669 1395 MobiDBLite consensus disorder prediction 1269 1288 - -
Nenu1g00669 1395 MobiDBLite consensus disorder prediction 1061 1089 - -
Nenu1g00669 1395 Gene3D - 516 948 - -
Nenu1g00669 1395 PANTHER RGPR-RELATED 1 1364 IPR024880 GO:0006914(InterPro)|GO:0007030(PANTHER)|GO:0012507(PANTHER)|GO:0048208(InterPro)|GO:0070971(PANTHER)|GO:0070973(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00669 K20353 COPII coat assembly protein SEC16
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:18716138 Nenu6g01139 Nenu-Chr6:38886117 wgd