AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00697 ATGGCTTCCGCAATTGCATTAAGGAGAGCCGCTACTCCAAGCCTCCTCAACAAGTTCCTCAACCCAGTCCGTTCTGTCACGGTTGTTCCACCCGCAGTGCGCTCCTTCAATACTAAGGCTCAGATGCTTGACTATGATGATGACGAGCATGGTGTTGATGTCAGTCGCCGCTCCGACCAGCCTGTCTCTCGCCGTCGTGATTACGTTCCTAATCTCTTCTCAGACGTGCTCGATCCTTTCTCTTCAACAAAGAGCTTGAGCCAGGTGCTTAATCTGATGGACCAGTTCATGGAGAACCCATTCCTGGCTGCATCGAGGGGGATGGGAGCTGGAACGAGGAGAGGATGGGACGTGAAGGAAGATGAGAATGCTCTGTATCTGAGGATGGACATGCCAGGGCTGGGGAAGGAAAACGTGAAGGTGTCTGTGGAGCAGAACACTCTGATCATCAAGGGAGAAGGGGAAAAAGAATCTGACGAGGAGAAGAGCGGGCGAAGGTACAGTAGCAGGATCGATCTGCCTGAGAAGCTGTACAAGATTGATCAGATTAAGGCGGAGATGAAGAATGGTGTTCTCAAGGTTATTGTTCCGAAGGTGAAGGAAGAGGAGAGGAAGGTCGTCTTGCAAGTTAAGATCGACTAA 642 50.93 MASAIALRRAATPSLLNKFLNPVRSVTVVPPAVRSFNTKAQMLDYDDDEHGVDVSRRSDQPVSRRRDYVPNLFSDVLDPFSSTKSLSQVLNLMDQFMENPFLAASRGMGAGTRRGWDVKEDENALYLRMDMPGLGKENVKVSVEQNTLIIKGEGEKESDEEKSGRRYSSRIDLPEKLYKIDQIKAEMKNGVLKVIVPKVKEEERKVVLQVKID 213
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00697 213 CDD ACD-sHsps-like 117 198 - -
Nenu1g00697 213 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 204 IPR044656 -
Nenu1g00697 213 Pfam Hsp20-alpha crystallin family 117 212 IPR002068 -
Nenu1g00697 213 Gene3D - 72 212 IPR008978 -
Nenu1g00697 213 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 107 213 IPR002068 -
Nenu1g00697 213 SUPERFAMILY HSP20-like chaperones 87 206 IPR008978 -
Nenu1g00697 213 FunFam 23.6 kDa heat shock protein mitochondrial 67 212 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00697 K13993 HSP20 family protein
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:19459126 Nenu1g05954 Nenu-Chr1:179009131 dispersed
Nenu Nenu-Chr1:1660878 Nenu1g00697 Nenu-Chr1:19459126 transposed
Nenu Nenu-Chr1:132735420 Nenu1g00697 Nenu-Chr1:19459126 transposed
Nenu Nenu-Chr3:102399407 Nenu1g00697 Nenu-Chr1:19459126 transposed
Nenu Nenu-Chr4:15037235 Nenu1g00697 Nenu-Chr1:19459126 transposed
Nenu Nenu-Chr8:14909082 Nenu1g00697 Nenu-Chr1:19459126 transposed
Nenu Nenu-Chr1:19459126 Nenu6g01155 Nenu-Chr6:39252389 wgd