AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00702 ATGACGACGCGGACGAATTTTTATAAGAATCCTTCATTCGCATATAGAAAGGATTTCAGTCTCGATTCCGTTCTTCAAAATCTCAGAGCTTATAACGCTGCGACTGGGAACGCTCCTCCAGCCGAAGAACCACGCCTGGACGACGAGGAGAAGAAAGTCAGTCGTAAACGCCCTCCTGATCGAAGGCGAAAACCTAATATCGATTTTATCAAAAATAAAGAAGAGAACGACGGTCCTCTCACTCACCAAAGTTACATTGAAAAGAGAAGGAAAGAAGTCAGGTCGTTTCAAGCTTATCAGGAATCGACCCCAGATGTTCTGGGAAGTTCCAATTCGAGTTTCAAGCCTTTGGTACAATACGAAAGTGATGAAAACACATCATCAGAAACATGTGAAGAAAAACAGGAGGAATGTGAAGATAAACTGGCTGCACCTAGTTCTGATCATATGAAAGAAGTTGATTGTATCAAGGCAAGAAGTGAGCAACGCTTTCCAGTTCCTGGAGAACCTGTTTGTGTGGTATGTGGAAAATATGGAGAGTATATTTGTGATGAGACAGGTGATGATATCTGTAGTATGGATTGCAAAACTGAGCTGCTGAAGCATGGGAATGTTGACCTGTCTGAGGGAGTAGTTAGCACCCAAGATTCTCTTGTTTGCCTTTCAGGAATAGGTGGTGGTTTAGTGATACCTGAGTTTAAGGAGGATATTTGGGATTTTGAATGGCTTAAGTGGACCACAAAGACATTCAATCTATGCACATATAGATGTTGGAAATGTCAGAGACCTGGTCACCTTGCAGAAGACTGTTTGGTGAAAACATGTAATCCTCAATCTCTTGCTTCAACTCAATCATGCAATCAGATGCTTGTCAAAGGCTGCAAGTCCAGTTCCATCTCCAGAGATCTTCTTGCGCTCTACAAAAGGTGCCACCAAGTAGGAAAAGGCTTATCGAGTGCAAAATGCAACCAATGTCGTGGCTCATCAAGTTTGGCAATGTGCCTTGATTGTAATACAATCTTTTGTGACAGTGCAGGTCATCTAAATGAGCACATTGCAGCACACCCATCCCATCAACAATATTACTCTTATAAGCTTAGACGTTTGGTAAAATGCTGCAAGTCAACATGCAATGTGACCAATATCAAGGATCTTTTGGCTTGTAACTATTGCTTTGATAAGGCCTTTGACAAGTTCTATGATATGTACACTGCCACCTGGAAAGGATCTGGACTTTGTATCATCTGGGGTTCCATATGTTGTGATGAACACTTCACATGGCACCGAATGAATTGTCCAAATGCTGATGTAGAAGATAGTGCATATATCCACCCCAATGGTCGTATCTCCGACAGCTTCTCCAGTGATCTTGAGCAAAGGTGA 1383 42.23 MTTRTNFYKNPSFAYRKDFSLDSVLQNLRAYNAATGNAPPAEEPRLDDEEKKVSRKRPPDRRRKPNIDFIKNKEENDGPLTHQSYIEKRRKEVRSFQAYQESTPDVLGSSNSSFKPLVQYESDENTSSETCEEKQEECEDKLAAPSSDHMKEVDCIKARSEQRFPVPGEPVCVVCGKYGEYICDETGDDICSMDCKTELLKHGNVDLSEGVVSTQDSLVCLSGIGGGLVIPEFKEDIWDFEWLKWTTKTFNLCTYRCWKCQRPGHLAEDCLVKTCNPQSLASTQSCNQMLVKGCKSSSISRDLLALYKRCHQVGKGLSSAKCNQCRGSSSLAMCLDCNTIFCDSAGHLNEHIAAHPSHQQYYSYKLRRLVKCCKSTCNVTNIKDLLACNYCFDKAFDKFYDMYTATWKGSGLCIIWGSICCDEHFTWHRMNCPNADVEDSAYIHPNGRISDSFSSDLEQR 460
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00702 460 Pfam HIT zinc finger 169 196 IPR007529 -
Nenu1g00702 460 MobiDBLite consensus disorder prediction 127 145 - -
Nenu1g00702 460 ProSiteProfiles Zinc finger CCHC-type profile. 256 270 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Nenu1g00702 460 MobiDBLite consensus disorder prediction 121 145 - -
Nenu1g00702 460 MobiDBLite consensus disorder prediction 42 84 - -
Nenu1g00702 460 PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN 1 444 - -
Nenu1g00702 460 Gene3D - 153 206 - -
Nenu1g00702 460 MobiDBLite consensus disorder prediction 32 84 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00702 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:19547455 Nenu3g02469 Nenu-Chr3:78124461 dispersed