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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00718 ATGGATTCAGTAATGGCGCGATCTTTGAAGGTGGCTGTAATCGGAGCTGGCGCCGCAGGTCTAGTCGCTGCTCGTGAACTCCAAAGGGAAGGTCACTTAGTTGTTGTTTTTGAGAAGAATAGCAAGCTCGGAGGTACATGGGTTTATGACCCCCGAGTCGAGACAGATCCCCCGAGTCTCGGTCCTCGGAGGGAAATCGTTCAAAGCAGTCTCTACAGCTCTCTCCGGACTAATCTTCCTCGCCAGATCATGGGTTTCTTGGATTATCCATTCCAGAAGAGAGAAAATGGCGGAGATGTGCGGACGTTTCCTGGTCACCAAGAGGTGCTCTCGTTTCTAAACCACTTCGCTCAGCAATTTCAACTTGTCAACTTGATTCGATTCGATACTGAAGTCGTTAGAGTGGAGAGAGTAAATGGAAGAAAGGACCAGTGGATCGTCGAATCACGGTCTTGTGCATCGGAGTCGGAGATGGAGGTGTTTCAGGCCGTTGTAATCTGTAATGGTCATAACTCGGAGCCTCGAACAGCTGATATTCTTGGTATTGATAGATGGCCTGGAAAGCAAATACACAGCCACAATTACCGCATTCCTGAACCATTTCAAGACCAGGTTGTGGTTTTAATTGGAAAAGGGGCTAGTGCCTATGATATATCTATAGAAATTTCAAAAGCTGCTAAAGAAGTCCATCTAACATCAAGATCTCCAAATGTTGAAGTTGGAAAACTACATAACTATGACAATATATGGCAGCATCACATGATAAAGTGCGTGTATGAAGATAGTAAGGTTGCCTTTTATGATGGATCCTCAGTGAAAGCGGATGTCATTTTCCATTGCACTGGGTACAAGTTCCATTTCCCATTTCTTGAAACAAATGGAATTGTAACTGTTGAGGACAACCGTGTTGGACCTCTATATAAGCATGTCTTTCCACCATGTTTAGCTCCTTGGATTTCCTTTGTTGGTCTACCTAACAAGGTTATCGCCTTTCTAACAGCTGAGTTGCAGTCCAAGTGGATAGCACAAGTTTTATCTGGAAAGGTGCTACTGCCCGAGGAAGAGGAGATGATGGCATCCGTCGAAGAATTCTACCAGCGTATGGAGGAGATGGGGAGACCCAAGCATTACACTCATATGTTGGACATGGATGCGTTTGAGTATAAAAACTGGGTTGCAGCTCAGGTTGGATTGCCACCCGTCGAGGAATGGATGAAACAGACGTATTCTGCTGCTGTCAAGAATATTCGGAGCCATCAGGAAGGTTTTCGAGACGAATGGGACGATGACTATTGGAAGTCCATAATTAGAAACCAGCCAAATTAA 1326 45.1 MDSVMARSLKVAVIGAGAAGLVAARELQREGHLVVVFEKNSKLGGTWVYDPRVETDPPSLGPRREIVQSSLYSSLRTNLPRQIMGFLDYPFQKRENGGDVRTFPGHQEVLSFLNHFAQQFQLVNLIRFDTEVVRVERVNGRKDQWIVESRSCASESEMEVFQAVVICNGHNSEPRTADILGIDRWPGKQIHSHNYRIPEPFQDQVVVLIGKGASAYDISIEISKAAKEVHLTSRSPNVEVGKLHNYDNIWQHHMIKCVYEDSKVAFYDGSSVKADVIFHCTGYKFHFPFLETNGIVTVEDNRVGPLYKHVFPPCLAPWISFVGLPNKVIAFLTAELQSKWIAQVLSGKVLLPEEEEMMASVEEFYQRMEEMGRPKHYTHMLDMDAFEYKNWVAAQVGLPPVEEWMKQTYSAAVKNIRSHQEGFRDEWDDDYWKSIIRNQPN 441
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00718 441 FunFam Flavin-containing monooxygenase 178 280 - -
Nenu1g00718 441 Pfam Flavin-binding monooxygenase-like 10 237 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Nenu1g00718 441 Pfam Flavin-binding monooxygenase-like 255 400 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Nenu1g00718 441 Gene3D - 10 425 IPR036188 -
Nenu1g00718 441 PRINTS Flavin-containing monooxygenase (FMO) signature 33 57 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nenu1g00718 441 PRINTS Flavin-containing monooxygenase (FMO) signature 267 294 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nenu1g00718 441 PRINTS Flavin-containing monooxygenase (FMO) signature 190 204 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nenu1g00718 441 PRINTS Flavin-containing monooxygenase (FMO) signature 332 345 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nenu1g00718 441 PRINTS Flavin-containing monooxygenase (FMO) signature 9 25 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nenu1g00718 441 PRINTS Flavin-containing monooxygenase (FMO) signature 217 232 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nenu1g00718 441 PANTHER DIMETHYLANILINE MONOOXYGENASE 9 428 IPR050346 -
Nenu1g00718 441 PIRSF FMO 7 259 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nenu1g00718 441 PIRSF FMO 239 409 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Nenu1g00718 441 Gene3D - 178 280 IPR036188 -
Nenu1g00718 441 SUPERFAMILY FAD-NAD(P)-binding domain 255 431 IPR036188 -
Nenu1g00718 441 SUPERFAMILY FAD-NAD(P)-binding domain 5 239 IPR036188 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00718 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:19925905 Nenu6g01191 Nenu-Chr6:39865514 dispersed
Nenu Nenu-Chr1:19925905 Nenu1g01316 Nenu-Chr1:37391372 transposed