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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00721 ATGAGTAGCGGGGATCTTATCAACATTCAACCCCACGAGCTCAAATTTCCATTTGAATTGAAGAAGCAGAGTTCATGTTCTCTGCAATTGACAAACAAGACCGAACAATATGTAGCCTTCAAGGTTAAAACAACTAACCCCAAGAAATACTGCGTGCGACCTAACACGGGAATAGTCCAACCTGGGACAACATGCGATGTCACAGTGACAATGCAAGCGCAAAAGGAGGCCCCATCTGATATGCAATGCAAAGACAAATTCCTCCTTCAGAGCGTTGCTGCTCCTCATGGTGCGACCACAAAGGATATAACCCCAGAGATGTTCAATAAAGAGGCTGGGAAGGTTGTGGAGGAGTTCAAATTGAGGGTGGTTTATATTCCCGCTAATCCTCCCTCCCCTGTTCCTGAAGGATCTGAAGAAGGATCTTCTCCTAGGGCACCTATCCTAGAGAATGGCAACCAAAACATGGGGTTATCTGAAGCTACAACAAGATCGGTAGAGGAACAAAAAGAGAAATCTTCAGAGGCATTGTCTATCATTTCCAAGTTAAATGTAGAGAAATCATATGCTCTTCAACAAAATCAGAAACTCCATCAAGAATTGGAGTTGATGAGAAAAGAGATTAGCAAAAAACATGCTGGTGGCTTCTCCTTCCTGTTTGTTGTACTGATTGGTCTTCTGGGCATCCTTGTCGGCTATCTCATAAACAGAGGACGTTGA 720 43.61 MSSGDLINIQPHELKFPFELKKQSSCSLQLTNKTEQYVAFKVKTTNPKKYCVRPNTGIVQPGTTCDVTVTMQAQKEAPSDMQCKDKFLLQSVAAPHGATTKDITPEMFNKEAGKVVEEFKLRVVYIPANPPSPVPEGSEEGSSPRAPILENGNQNMGLSEATTRSVEEQKEKSSEALSIISKLNVEKSYALQQNQKLHQELELMRKEISKKHAGGFSFLFVVLIGLLGILVGYLINRGR 239
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00721 239 Pfam MSP (Major sperm protein) domain 7 110 IPR000535 -
Nenu1g00721 239 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Nenu1g00721 239 PIRSF VAMP-assoc-prot 1 237 IPR016763 GO:0005789(InterPro)
Nenu1g00721 239 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 6 235 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Nenu1g00721 239 MobiDBLite consensus disorder prediction 128 171 - -
Nenu1g00721 239 FunFam Vesicle-associated protein 1-1 1 129 - -
Nenu1g00721 239 SUPERFAMILY PapD-like 2 138 IPR008962 -
Nenu1g00721 239 Gene3D Immunoglobulins 2 129 IPR013783 -
Nenu1g00721 239 MobiDBLite consensus disorder prediction 147 163 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00721 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:19973427 Nenu6g01153 Nenu-Chr6:39231158 dispersed
Nenu Nenu-Chr1:19973427 Nenu6g01185 Nenu-Chr6:39699685 wgd