AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00727 ATGGTGGGTATTTCTTGTCTTCCTCACTGGCTTCAGGCCCTTCTCGGGGAGAAGTTCTTTAATCAGTGTTTGATTCATGAGTCTGCGAGGAAAAACGAGAAGAACATATTTTGCTTGGATTGTTGCACTAGTATTTGTCCACACTGCTTATCTCCTCATCGTTCTCATCGGCTCTTACAGATAAGAAGATACGTCTATCATGACGTTATACGGCTGGATGACATTGAAAAATTAATCGATTGCGCCTTTGTTCAATCTTACACGACCAACAGTGCAAAGGTGGTATTTTTAAACCAGAGGCCACAGTCTCGACCTTTTAGAGGCTCCGGTAGCATATGCAGCACCTGCGACAGGAGCCTTCAAGACCCATATCTCTTCTGTTCTCTCTCCTGCAAGGTTCATCATCTGGCCAGGAACGAAGGTGGATTATCGAAATACCTTTACGAGTGTGAATACCTTCCATTACCAGAAGGAGGAAAAGGAGAGAACTTTTGCGAAGTACTGGACGAAGGGCAAATGACGCCCGACTCGGTCCTCGAACCGCCGGGTTTGTTGCGCACCTCGTCCGGGTCGAGCGCAAGTGGTGGCGGCGTGGGTTGCAGGAACCTTGCCTGCACTGCTACCACGGATTTTGTGAAGAAGAAACGCAGCGGCGTTTCAGTTTCACGGGCAACTTATCGGCCGACATGCTCACGCGCGTCGGAAATCTCCATGAGTAACAGGCGAAAGAGTATGCCACACCGCTCTCCACTTTATTAA 759 48.75 MVGISCLPHWLQALLGEKFFNQCLIHESARKNEKNIFCLDCCTSICPHCLSPHRSHRLLQIRRYVYHDVIRLDDIEKLIDCAFVQSYTTNSAKVVFLNQRPQSRPFRGSGSICSTCDRSLQDPYLFCSLSCKVHHLARNEGGLSKYLYECEYLPLPEGGKGENFCEVLDEGQMTPDSVLEPPGLLRTSSGSSASGGGVGCRNLACTATTDFVKKKRSGVSVSRATYRPTCSRASEISMSNRRKSMPHRSPLY 252
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00727 252 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 251 - -
Nenu1g00727 252 Pfam PLATZ transcription factor 62 133 IPR006734 -
Nenu1g00727 252 ProSiteProfiles Zinc finger B-box type profile. 23 61 IPR000315 GO:0008270(InterPro)
Nenu1g00727 252 SUPERFAMILY B-box zinc-binding domain 21 65 - -
Nenu1g00727 252 MobiDBLite consensus disorder prediction 232 252 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00727 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:20272466 Nenu1g03625 Nenu-Chr1:100087391 dispersed
Nenu Nenu-Chr7:54846919 Nenu1g00727 Nenu-Chr1:20272466 transposed
Nenu Nenu-Chr1:20272466 Nenu6g01193 Nenu-Chr6:39920385 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Nenu PLATZ 3.2e-27 No_clan TF PLATZ