AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00731 ATGGCTTTGTTTCGCTTCTTCCCCTTGTTTTTGCTCTGCATTTCCTCATTTCTGTGCTTCTGTTTCGCCGATGATCCCTTCGTCTTTTACGACTGGGAGGTCTCTTACATCACGGCTGCACCTTTGGGTGTCAAACAACAGGTAATAGCGATTAACAGCAAGTTCCCGGGTCCTATTGTTAATGTGACTACGAATAACAACGTCGTAGTCAATGTTCTCAACAGTCTGGATGAAGATCTCCTCATTACTTGGGACGGCATCCAGCATCGTCGTAATTCTTGGCAAGATGGCGTTCTGGGCACCAATTGTCCTATCCCTGTAGATTATAACTGGACTTACCAGTTTCAAGTCAAGGATCAGATTGGGAGTTTCTTCTACTTCCCTTCGCTCCATTTCCAGAGAGCGGCGGGTGGTTATGGAGGCATCATTATAAACAACCGGCCTATCATCCCTGTGCCTTTTGGGACCCCGGATGGAGATTTCACCATTCTCATTGGTGACTGGTACACCCAAAACCATACGGATCTGAGAAAAGCCCTTGATGCCAGTAAAGACCTTGGGATGCCAGACGGAGTTCTCATAAACGGGAAGGGCCCTTACAGATATAACACCACTCTCGTCCCAGATGGCATTGATTTTGAAACTTTTAATGTCCAACCAGGAAAAACTTACCGTATTCGTGTACATAATGTTGGAATATCAACTACTTTGAACTTCAGGATCCAGAACCATAACCTGCTTCTTGTAGAGACAGAGGGATCATACACAGTGCAGCAAAATTATACTAGCCTAGATATTGCTGTTGGACAATCTTATTCATTTTTGGTTACCATGGATCAGAATGCAAGCACAGATTACTATGTTGTAGCAAGTGCTAGGTTTGTGAATGAATCTCTTTGGAAAAGAGTCACAGGTGTTGCAATCCTACATTATTCCAATTCCAAGGGAAAAGCATCTGGCCCTCTTCCGGATCCACCAAATGACTTTTATGACAAAACATTCTCAATGAACCAGGCAAGATCAATCAGGTGGAATGTGTCTGCTAGTGGTGCTCGCCCTAATCCACAGGGATCTTTTAGATATGGCTCTATCAATGTGACCGATATTTATGTACTGAAGAACAAGCCGCCAGTAACCATTGATGGCAAACGAAGAACCACTCTTAGTGGGATTTCATATGTCAATCCATCTACACCAATCAGGCTTGCTGACCAGTACAATGTGAAGGGGGTATACAAGCTTGATTTCCCCAATGAGCCACTTACTGGGGCACCCAGAATGTCAACATCTGTTATTAATGGTACTTACAGGGGTTTTATGGAAATCATCTTACAAAATAATCACACAACAGTCCAAAGCTATCACATGGATGGATATGCATTTTTTGTGGTTGGGATGGATTTTGGAGAATGGACAGAAAACAGCAGGGGTACATATAATAAATGGGATGGAATTGCTCGCAGCACGATACAGGTATACCCTGGGGCATGGACAGCAATTTTGGTCTCCCTTGATAATGTTGGTGTCTGGAACCTCAGAACAGAAAATCTTGACTCATGGCATCTAGGTCAAGAAACGTATGTAAGGATTGTCAATCCAGAGGCCAACAATAAAACTGAGTTACCAATACCAGACAATGCCCTTTATTGTGGTGAACTCCAATCTTTGCAAAAGCCACAACAACGCCACCACAAGAAGAACGCTGCATCATCAATCACAGGTGGAAGATGGAATCTGTTGTACACTCTGCAAATGACTCTCTTATCTGCTTTTTTGATTTTCCACTAA 1788 43.29 MALFRFFPLFLLCISSFLCFCFADDPFVFYDWEVSYITAAPLGVKQQVIAINSKFPGPIVNVTTNNNVVVNVLNSLDEDLLITWDGIQHRRNSWQDGVLGTNCPIPVDYNWTYQFQVKDQIGSFFYFPSLHFQRAAGGYGGIIINNRPIIPVPFGTPDGDFTILIGDWYTQNHTDLRKALDASKDLGMPDGVLINGKGPYRYNTTLVPDGIDFETFNVQPGKTYRIRVHNVGISTTLNFRIQNHNLLLVETEGSYTVQQNYTSLDIAVGQSYSFLVTMDQNASTDYYVVASARFVNESLWKRVTGVAILHYSNSKGKASGPLPDPPNDFYDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTDIYVLKNKPPVTIDGKRRTTLSGISYVNPSTPIRLADQYNVKGVYKLDFPNEPLTGAPRMSTSVINGTYRGFMEIILQNNHTTVQSYHMDGYAFFVVGMDFGEWTENSRGTYNKWDGIARSTIQVYPGAWTAILVSLDNVGVWNLRTENLDSWHLGQETYVRIVNPEANNKTELPIPDNALYCGELQSLQKPQQRHHKKNAASSITGGRWNLLYTLQMTLLSAFLIFH 595
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00731 595 Gene3D - 364 563 IPR008972 -
Nenu1g00731 595 SUPERFAMILY Cupredoxins 22 174 IPR008972 -
Nenu1g00731 595 Gene3D - 28 148 IPR008972 -
Nenu1g00731 595 PANTHER MULTI-COPPER OXIDASE 29 541 IPR045087 GO:0016491(PANTHER)|GO:0046658(PANTHER)
Nenu1g00731 595 FunFam Monocopper oxidase-like protein 158 351 - -
Nenu1g00731 595 FunFam Monocopper oxidase-like protein SKU5 22 146 - -
Nenu1g00731 595 FunFam Monocopper oxidase-like protein 363 561 - -
Nenu1g00731 595 SUPERFAMILY Cupredoxins 379 551 IPR008972 -
Nenu1g00731 595 SUPERFAMILY Cupredoxins 155 353 IPR008972 -
Nenu1g00731 595 Pfam Multicopper oxidase 160 314 IPR001117 -
Nenu1g00731 595 Pfam Multicopper oxidase 398 534 IPR011706 GO:0005507(InterPro)|GO:0016491(InterPro)
Nenu1g00731 595 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507(InterPro)
Nenu1g00731 595 Gene3D - 158 351 IPR008972 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00731 K19791 iron transport multicopper oxidase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:20480706 Nenu1g02487 Nenu-Chr1:69255349 dispersed
Nenu Nenu-Chr1:206899883 Nenu1g00731 Nenu-Chr1:20480706 transposed
Nenu Nenu-Chr1:20480706 Nenu6g01202 Nenu-Chr6:40168100 wgd