AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu1g00743 ATGGCCAATTCATGGGCAATGGATGGCTTTGCTTTATTTGTAATCAAGTCGGCAGTTGTGGTGTTACTTTTACTCTTGGAAGCCATCGGCGACGGTGAGGCAGCTCGGGCTCGGCTGGAGAGGTGGGAAGCGGGGATCAGAATGCCGACGGAGAAGGAAGAACGGGAAGAGAACGGGGAGGAAATCGGCACGAGATGGGCTGTTCTCGTTGCCGGTTCTTCGGGTTTCGGCAATTACCGGCATCAGGCGGACGTATGCCACGCTTATCAGCTGCTGAGAAAAGGAGGATTGAAGGAGGAGAACATAGTGGTGTTTATGTACGATGACATCGCCTACAGTGAATTCAATCCCAGGCCAGGAATCATCATCAACCATCCACAAGGTCAAGATGTCTACGCTGGCGTCCCTAAGGACTACACAGGGGAGAATGTCACTGCTAAGAACCTGTATGCAGTACTTCTTGGTGATAAGAGAGCTGTACGGGGTGGAAGTGGTAAGGTCATTGATAGCAAACCAAATGACAGAATCTTCTTTTATTACTCTGACCATGGAGGCCCAGGTGTGCTTGGAATGCCCAATTTGCCTTTCATCTATGCTGTTAATTTCATTGAGGTCTTAAAGAAGAAACATGCAGCTAGAGGTTACAAAGAGATGGTTATATATGTTGAGGCCTGTGAGAGTGGGAGTATTTTTGAAGGTCTAATGACTGAAGACTTGGATATTTATGTTACAACAGCATCAAATGCTCAGGAGCTCAGTTGGGGAACTTATTGTCCTGGGATGGTACCTTCTCCACCTCCAGAATTCTTAACTTGCTTGGGGGACTTGTACAGCGTTGCCTGGATGGAAGATAGTGAAATCCACAGTCTGAAGGAAGAAACAATACAACAACAGTATCAAAATGTAAAATATCGGGCTTCCAATTACAACACTTATGATGTTGGATCTCATGTGATGGAATATGGGAACAAAAGCATCAAATTTGAGAAGCTTTATCTATATCAAGGTTTTAGCCAGGATACTGAGAAAATCAATCAAAACTCCCTTCAATTCCATATGGATGTTGTTAACCAAAGGGATGCAGATCTCCTCTTCTTGTGGCAAAGGTACAAGAAGTCAGAGGAAGGATCCAAAAAGAAAAAAGAAATTTTCAAGCAAATAGCAGAGACAATAAAGCATAGAATTCATCTGGATGGTAGTGTTGAGTTGATCGGCAATCTTCTCTTTGGACCTGAAAGAGCTGCTTCTATCCTCAGTGCCGTGAGGCCATCTGGGTGGCCCTTGGTTGATAACTGGGATTGTCTGAAAGCATTGGTCCGGCTGTTAGAATCACATTGTGGGTCATTGACTCAATATGGGATGAAACACATGCGTACACTTGCAAACATTTGCAACAGTGGTATCTCACAGGATGCAATGAAGGAAGCTTGTATGGCTGCTTGTAGGGGACGTCCATCGGGGTCACTGAATCCTTCAAACCTAGGTTATAGTGCTTGA 1497 44.89 MANSWAMDGFALFVIKSAVVVLLLLLEAIGDGEAARARLERWEAGIRMPTEKEEREENGEEIGTRWAVLVAGSSGFGNYRHQADVCHAYQLLRKGGLKEENIVVFMYDDIAYSEFNPRPGIIINHPQGQDVYAGVPKDYTGENVTAKNLYAVLLGDKRAVRGGSGKVIDSKPNDRIFFYYSDHGGPGVLGMPNLPFIYAVNFIEVLKKKHAARGYKEMVIYVEACESGSIFEGLMTEDLDIYVTTASNAQELSWGTYCPGMVPSPPPEFLTCLGDLYSVAWMEDSEIHSLKEETIQQQYQNVKYRASNYNTYDVGSHVMEYGNKSIKFEKLYLYQGFSQDTEKINQNSLQFHMDVVNQRDADLLFLWQRYKKSEEGSKKKKEIFKQIAETIKHRIHLDGSVELIGNLLFGPERAASILSAVRPSGWPLVDNWDCLKALVRLLESHCGSLTQYGMKHMRTLANICNSGISQDAMKEACMAACRGRPSGSLNPSNLGYSA 498
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu1g00743 498 Gene3D - 63 358 - -
Nenu1g00743 498 Pfam Peptidase C13 family 65 336 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Nenu1g00743 498 PIRSF AE 11 498 IPR043577 GO:0004197(InterPro)|GO:0051603(InterPro)
Nenu1g00743 498 FunFam Vacuolar-processing enzyme beta-isozyme 358 486 - -
Nenu1g00743 498 PRINTS Hemoglobinase (C13) cysteine protease signature 66 90 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Nenu1g00743 498 PRINTS Hemoglobinase (C13) cysteine protease signature 91 120 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Nenu1g00743 498 PRINTS Hemoglobinase (C13) cysteine protease signature 215 231 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Nenu1g00743 498 PRINTS Hemoglobinase (C13) cysteine protease signature 138 153 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Nenu1g00743 498 PRINTS Hemoglobinase (C13) cysteine protease signature 166 185 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Nenu1g00743 498 CDD legumain-C 385 477 IPR048501 -
Nenu1g00743 498 Pfam Legumain, prodomain 385 481 IPR048501 -
Nenu1g00743 498 FunFam Vacuolar-processing enzyme beta-isozyme 63 359 - -
Nenu1g00743 498 PANTHER HEMOGLOBINASE FAMILY MEMBER 52 481 IPR001096 GO:0004197(PANTHER)|GO:0006508(InterPro)|GO:0006624(PANTHER)|GO:0008233(InterPro)|GO:0051603(PANTHER)
Nenu1g00743 498 Gene3D - 359 486 IPR046427 -
Nenu1g00743 498 PIRSF Legumain 13 498 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu1g00743 K01369 legumain [EC:3.4.22.34]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:20706173 Nenu8g00346 Nenu-Chr8:6569011 dispersed
Nenu Nenu-Chr1:20706173 Nenu6g01211 Nenu-Chr6:40369082 wgd