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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu2g03916 ATGCTTACACGGTCGACGATGGTTCCCTGTCCGGAAGCCCTTCTGCGCTTTGTTTTCTCTCTGACTCTGTTGTCCGCTGCGGCATTCGCATCCTCACCCTTCCCAATCTCTAATGGCACTACGGTCTTCGATCTCCTCCCCCAATTCGGGCTGCCGAGTGGACTCTTACCCAGCTCGGTGAGGAACTTCTCTTTCGCCAATGATGGAAGGTTCGTCGTCGAGATGGAGAAACCTTGTTCCATTCAGTTTGACTACTTGGTTTACTACGAACGGAAGATCACCGGTACCCTCAAGTACGGTTCGATCACAAATCTCAAGGGAATTAGAGTCAAGCGTTTGTTCTTGTGGCTCGACGTTGAGGAGATCAGGGTGGATTTGCCGCCGTCTTACTATATATATTTTCAGGTCGGCCTCATCAATAAGAAGCTTGACGCCGGCCAGTTTCGGACTGTGCATCCTTGCCAGAATGGGGTTTCATGTGAAGGATCCTGGAAAGATCTTCTCAAGGTGCCAACTCCTTTTAACGAAGTTACAATGCTACTCACGGAGTAG 552 50.0 MLTRSTMVPCPEALLRFVFSLTLLSAAAFASSPFPISNGTTVFDLLPQFGLPSGLLPSSVRNFSFANDGRFVVEMEKPCSIQFDYLVYYERKITGTLKYGSITNLKGIRVKRLFLWLDVEEIRVDLPPSYYIYFQVGLINKKLDAGQFRTVHPCQNGVSCEGSWKDLLKVPTPFNEVTMLLTE 183
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu2g03916 183 PANTHER T31J12.3 PROTEIN-RELATED 31 154 IPR007493 -
Nenu2g03916 183 SUPERFAMILY At5g01610-like 15 155 IPR036758 -
Nenu2g03916 183 Pfam Protein of unknown function, DUF538 44 148 IPR007493 -
Nenu2g03916 183 Gene3D - 34 158 IPR036758 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu2g03916 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:168300542 Nenu2g03916 Nenu-Chr2:106280397 dispersed
Nenu Nenu-Chr2:106280397 Nenu7g00121 Nenu-Chr7:2180076 dispersed
Nenu Nenu-Chr2:106280397 Nenu2g03918 Nenu-Chr2:106302329 proximal
Nenu Nenu-Chr2:106280397 Nenu7g00120 Nenu-Chr7:2168066 wgd