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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu2g03995 ATGAATTGTATCGAAATCGAAACAAAAATTCCTCACCCATCAAGGAATGAGGTTCCTACTTTTGCCAGAGGGACCAATGCAAAAGAATACAAAAGCTTTGGTGGATCTATTCTTGTACCTATTGCAAGGCTAGATCAAGGAGAAAGAGGAAGAAAGATGTATCATCATCATCATCACCACGGGAAGACCAGCTTCCCTTCTTCAACGATGTCTATTCCTCCAGAAAGACATTTGTTCCTGCAAAATGGAAATGGCCGTGGAGATACAGGATTAATTCTCTCAACTGATGCTAAGCCCAGATTGAAGTGGACACCAGAGCTCCACGAACGCTTCATTGAAGCTGTCAATCAGCTTGGAGGAGCAGACAAGGCTACTCCAAAAACAGTTCTGAAGCTCATGGGGATTCCAGGGCTTACCTTGTATCACTTAAAAAGCCATCTTCAGAAATACAGACTCAGTAAGAATCTCCACGGACAAGCTAATATGGGGACCAACAAGAATGTGGCAGGAGACAGGATATCTGAAGCAAGTGGAGCACTAATGAGCAATACAAGCCCCAGTTCCCAGACAAACAAAAACTTGCAGATAAGTGAAGCAATTCAAATACAAATTGAAGTGCAGAGAAGGCTGCATGAACAGCTTGAGGTGCAGCGACACCTACAGCTCCGGATAGAAGCCCAGGGAAAATACCTTCAGTCGGTGCTGGAGAAAGCCCAGGAGACACTTGGAAGACAGAACCTGGGCTCTGTGGAATTTGATGCTGCAAAAATGCAGTTTCCGGAACTAGTCTCCAAAGTTTCTGCTGAATGTCTGAACTCCACCTTCCCTGAGTTGAAAGAATTGCAAGGTTTGTGCTTGTGTCCTCAGCAAACACAAAAAATGCAGCCCACGGATTGTTCAGTGGATAGTTGCTTGACCTCATGTGAAGGATCTCAAAAGGACCAAGAGATACATAATATTGAGGTGGGTTTGAGACCTTATCAGAGTAGTGCATCTCTGGGCCTAAAGGAAATTGTGGATGACTCCAGGATTGAGCAGCCTGAACCTACATGGGGAGAAGACCTGAATGAAAATAAAATGTTTTCTTCTTCCATCGGAAGAGATGCCGAAAGAATCATGTTCCCCATGCAAAGAAGCTGCAGCAGTTTATCTACGACCAGTAGGGTTCAGGGAGAAAACCGGAATGCCAGCAGCAGCTTTGCTGAGGCAAGAACCAAAGAAGGAAATGAAGATGACAGCTTCCTTAACCAAAACAGTGCTAGAAGACCTGTGGCTAATCTGGAGAATGATATGTCAAAAGGGTTCAGATTGCCACATTTAACAGCAAAACTGGATTTAAATACCCAAGAAAATGATAGTACCACTCACAAACAATTTGACTTGAATGGATTCAGCTGGACCTAA 1404 43.95 MNCIEIETKIPHPSRNEVPTFARGTNAKEYKSFGGSILVPIARLDQGERGRKMYHHHHHHGKTSFPSSTMSIPPERHLFLQNGNGRGDTGLILSTDAKPRLKWTPELHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANMGTNKNVAGDRISEASGALMSNTSPSSQTNKNLQISEAIQIQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGSVEFDAAKMQFPELVSKVSAECLNSTFPELKELQGLCLCPQQTQKMQPTDCSVDSCLTSCEGSQKDQEIHNIEVGLRPYQSSASLGLKEIVDDSRIEQPEPTWGEDLNENKMFSSSIGRDAERIMFPMQRSCSSLSTTSRVQGENRNASSSFAEARTKEGNEDDSFLNQNSARRPVANLENDMSKGFRLPHLTAKLDLNTQENDSTTHKQFDLNGFSWT 467
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu2g03995 467 Pfam Myb-like DNA-binding domain 100 151 IPR001005 -
Nenu2g03995 467 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 153 IPR006447 GO:0003677(InterPro)
Nenu2g03995 467 Gene3D - 97 155 - -
Nenu2g03995 467 SUPERFAMILY Homeodomain-like 97 153 IPR009057 -
Nenu2g03995 467 Pfam MYB-CC type transfactor, LHEQLE motif 194 241 IPR025756 -
Nenu2g03995 467 FunFam Myb family transcription factor 97 155 - -
Nenu2g03995 467 MobiDBLite consensus disorder prediction 382 403 - -
Nenu2g03995 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 155 IPR017930 -
Nenu2g03995 467 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 81 378 IPR046955 GO:0003700(InterPro)
Nenu2g03995 467 MobiDBLite consensus disorder prediction 52 72 - -
Nenu2g03995 467 MobiDBLite consensus disorder prediction 448 467 - -
Nenu2g03995 467 MobiDBLite consensus disorder prediction 382 418 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu2g03995 K28175 GARP family transcription factor, PHR1 subfamily
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr2:108006496 Nenu3g03257 Nenu-Chr3:92998829 dispersed
Nenu Nenu-Chr2:108006496 Nenu7g00032 Nenu-Chr7:707585 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nenu1g00223 . 1 353 G2-like Transcription Factor family AT1G32240 51.087 4.96e-80 246.0
Nenu1g00703 . 1 241 G2-like Transcription Factor family AT3G24120 65.975 8.78e-104 300.0
Nenu1g01437 . 167 259 G2-like Transcription Factor family AT5G06800 58.333 5.40e-25 107.0
Nenu1g01462 . 1 263 G2-like Transcription Factor family AT5G45580 49.466 4.13e-80 241.0
Nenu1g02100 . 56 393 G2-like Transcription Factor family AT4G28610 50.636 9.31e-105 316.0
Nenu1g03041 . 59 418 G2-like Transcription Factor family AT2G20570 48.166 1.71e-92 283.0
Nenu1g03186 . 39 131 G2-like Transcription Factor family AT2G42660 64.516 1.74e-33 125.0
Nenu1g04534 . 59 420 G2-like Transcription Factor family AT2G20570 49.874 4.79e-95 290.0
Nenu1g05374 . 1 232 G2-like Transcription Factor family AT2G01060 47.934 9.31e-56 179.0
Nenu1g05375 . 4 251 G2-like Transcription Factor family AT2G01060 67.568 8.36e-123 351.0
Nenu1g05376 . 23 275 G2-like Transcription Factor family AT3G24120 50.758 4.57e-75 230.0
Nenu1g05505 . 1 287 G2-like Transcription Factor family AT4G13640 65.495 5.78e-129 369.0
Nenu1g05761 . 26 282 G2-like Transcription Factor family AT2G01060 60.806 1.22e-95 283.0
Nenu1g06334 . 6 183 G2-like Transcription Factor family AT2G42660 41.379 1.36e-35 130.0
Nenu2g00459 . 51 173 G2-like Transcription Factor family AT2G40260 61.111 2.61e-39 142.0
Nenu2g00460 . 51 352 G2-like Transcription Factor family AT2G40260 39.692 2.63e-46 161.0
Nenu2g00636 . 1 315 G2-like Transcription Factor family AT3G46640 48.732 2.92e-80 245.0
Nenu2g01130 . 1 432 G2-like Transcription Factor family AT2G03500 49.687 6.23e-128 375.0
Nenu2g02106 . 51 358 G2-like Transcription Factor family AT2G40260 37.383 7.52e-42 148.0
Nenu2g02107 . 71 173 G2-like Transcription Factor family AT2G40260 68.571 1.56e-42 151.0
Nenu2g02256 . 10 101 G2-like Transcription Factor family AT1G25550 46.809 1.90e-18 79.0
Nenu2g02257 . 1 305 G2-like Transcription Factor family AT3G46640 49.383 1.42e-74 229.0
Nenu2g02258 . 1 217 G2-like Transcription Factor family AT3G46640 56.911 1.50e-76 233.0
Nenu2g03137 . 1 335 G2-like Transcription Factor family AT3G10760 58.0 6.40e-91 271.0
Nenu2g03794 . 192 328 G2-like Transcription Factor family AT5G06800 75.912 9.68e-68 218.0
Nenu2g03995 . 1 401 G2-like Transcription Factor family AT5G18240 53.63 2.24e-130 381.0
Nenu3g01296 . 1 288 G2-like Transcription Factor family AT4G13640 66.242 2.61e-129 369.0
Nenu3g01434 . 17 365 G2-like Transcription Factor family AT4G28610 51.804 8.86e-106 320.0
Nenu3g01735 . 1 387 G2-like Transcription Factor family AT1G32240 51.531 2.02e-88 269.0
Nenu3g01837 . 1 245 G2-like Transcription Factor family AT5G45580 45.525 4.65e-63 197.0
Nenu3g02434 . 112 400 G2-like Transcription Factor family AT5G16560 47.181 5.94e-72 231.0
Nenu3g02874 . 10 297 G2-like Transcription Factor family AT1G25550 59.247 1.26e-108 320.0
Nenu3g03257 . 24 327 G2-like Transcription Factor family AT1G69580 46.377 2.36e-80 247.0
Nenu4g01272 . 1 82 G2-like Transcription Factor family AT1G14600 68.293 4.84e-33 120.0
Nenu4g01430 . 86 400 G2-like Transcription Factor family AT5G16560 46.933 3.05e-74 237.0
Nenu4g01996 . 10 311 G2-like Transcription Factor family AT1G25550 53.87 5.34e-106 313.0
Nenu4g02190 . 25 305 G2-like Transcription Factor family AT1G69580 39.527 4.01e-35 129.0
Nenu5g01793 . 2 326 G2-like Transcription Factor family AT2G03500 41.096 3.49e-66 215.0
Nenu5g01848 . 10 276 G2-like Transcription Factor family AT5G42630 45.399 5.14e-68 212.0
Nenu6g00361 . 2 315 G2-like Transcription Factor family AT2G03500 43.713 8.16e-71 226.0
Nenu6g00401 . 3 276 G2-like Transcription Factor family AT5G42630 45.994 1.25e-70 219.0
Nenu7g00032 . 1 401 G2-like Transcription Factor family AT5G18240 51.651 3.23e-136 395.0
Nenu7g00201 . 175 322 G2-like Transcription Factor family AT5G06800 70.861 3.02e-68 219.0
Nenu7g00845 . 1 335 G2-like Transcription Factor family AT3G10760 59.302 1.85e-94 280.0
Nenu7g00945 . 69 237 G2-like Transcription Factor family AT4G13640 57.059 2.50e-46 150.0
Nenu7g01058 . 5 152 G2-like Transcription Factor family AT2G01060 75.0 4.33e-76 232.0
Nenu7g01801 . 1 293 G2-like Transcription Factor family AT1G79430 45.872 2.12e-72 226.0
Nenu8g00701 . 1 432 G2-like Transcription Factor family AT2G03500 49.789 1.07e-123 365.0
Nenu8g01506 . 12 200 G2-like Transcription Factor family AT3G04450 30.846 3.05e-14 69.3
Nenu8g01969 . 77 435 G2-like Transcription Factor family AT3G13040 53.209 3.17e-116 351.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Nenu Myb_DNA-binding 1.5e-09 CL0123 TF GARP-G2-like