AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu2g03997 ATGGCGATGCAAGGAAGGCGGAGGCCCAAAACAAAGATTGTCTGTACGTTAGGTCCTGCTTCAAGGTCAGTGCCTATGATCGAGAAGTTGCTGAGAGCGGGCATGAATGTTGCACGCTTCAACTTCTCTCACGGTTCTCACGCTTACCACCAAGAAACCCTTGATAACCTCAGAACCGCCATGGAGAACACTGGGATACTCTGTGCCGTCATGCTGGATACCAAGGGACCAGAAATTCGAACTGGGTTTTTGAAGGATGGAAAGCCCATTAATCTGAAGAAGGGTCAAGAGGTAACCATCTCTACCGATTATAGTATCAAAGGTGATGAGAACATGATTTGCATGAGCTACAGAAAATTAGCTGAGGACTTAAAGCCGGGAAGTGTGATACTATGTTCTGATGGCACAATTACACTCACTGTTCTGTCTTCTGACAGGAAGTTGGGTTTGGTTAAGTGCCGCTGTGAGAATTCTGCTGTTCTTGGTGAAAGGAAAAATGTCAATCTTCCAGGAGTCATTGTAGATCTCCCAACTCTGACAGAGAAAGACAAGGAGGACATCTTACAGTGGGGGGTCCCCAATAAGATTGACATGATTGCTCTATCCTTTGTACGCAAAGGTTCAGACCTTGTTGAGGTCCGAAAGGTGCTTGGGAAGCATGCCAAAAATATCCTTCTCATGTCAAAGGTTGAAAATCAAGAAGGGGTGGCTAATTTTGATGACATTCTTGTGAACTCTGATGCATTTATGGTGGCACGAGGTGATCTGGAAATGGAAATTCCAATTGAGAAGTTATTTCTAGCACAAACAGTGATGATTTACAAATGCAACATACAGGGAAAACCTGTAGTCACTGCAACTCAAATGTTGGAATCTATGATCAAGTCTCCACGTCCTACTCGAGCTGAAGCCACTGATGTTGCCAATGCAGTTATTGATGGCACAGATTGTGTAATGCTTAGCGGGGAAACAGCTGCAGGAGCTTACCCTGAACTTGCTGTTCAAACAATGTCCAGGATTTGCATAGAAGCAGAGTCCTCTCTTGATTATGGGGGAGTTTTTAAACGGATCATGCAAGCTGCACCAGTACCCATGAGCCCATTAGAGAGCTTGGCTTCCTCTGCAGTACGTACAGCCAACACGGCAAAAGCAGCTCTGATCTTGGTTCTAACAAGAGGGGGAAGTACTGCAAAGCTGGTGGCCAAATATAGGCCTGCTATGCCAATCTTATCTGTGGTGGTACCTGAGATAAAGACGGATTTTTTCACTTGGTTTTGCAGTGATGAAGCTCCGGCAAGACATAGCCTTATTTTTCGAGGGTTGGTGCCTGTTTTAAAAGCAGGATCTGCAAAGGCTTCTCATACAGAAGCCACTGAGGAAGCACTAGAGTTTGCCCTTCAACATGGAAAAGAGAAGGGACTCTGCAAGCCCGGGGATGCAGTTGTTGCACTGCATCGAGTTGGAACTGCATCTGTTATCAAGATTTTGACAGTGAAGTGA 1500 45.4 MAMQGRRRPKTKIVCTLGPASRSVPMIEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMENTGILCAVMLDTKGPEIRTGFLKDGKPINLKKGQEVTISTDYSIKGDENMICMSYRKLAEDLKPGSVILCSDGTITLTVLSSDRKLGLVKCRCENSAVLGERKNVNLPGVIVDLPTLTEKDKEDILQWGVPNKIDMIALSFVRKGSDLVEVRKVLGKHAKNILLMSKVENQEGVANFDDILVNSDAFMVARGDLEMEIPIEKLFLAQTVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVIDGTDCVMLSGETAAGAYPELAVQTMSRICIEAESSLDYGGVFKRIMQAAPVPMSPLESLASSAVRTANTAKAALILVLTRGGSTAKLVAKYRPAMPILSVVVPEIKTDFFTWFCSDEAPARHSLIFRGLVPVLKAGSAKASHTEATEEALEFALQHGKEKGLCKPGDAVVALHRVGTASVIKILTVK 499
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu2g03997 499 CDD Pyruvate-Kinase 9 498 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nenu2g03997 499 PRINTS Pyruvate kinase family signature 196 210 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nenu2g03997 499 PRINTS Pyruvate kinase family signature 253 277 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nenu2g03997 499 PRINTS Pyruvate kinase family signature 322 338 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nenu2g03997 499 PRINTS Pyruvate kinase family signature 278 302 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nenu2g03997 499 PRINTS Pyruvate kinase family signature 66 82 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nenu2g03997 499 PRINTS Pyruvate kinase family signature 226 252 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nenu2g03997 499 PRINTS Pyruvate kinase family signature 303 321 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nenu2g03997 499 NCBIfam pyruvate kinase 10 488 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nenu2g03997 499 Gene3D - 77 177 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Nenu2g03997 499 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 7 350 IPR015813 GO:0003824(InterPro)
Nenu2g03997 499 FunFam Pyruvate kinase 77 177 - -
Nenu2g03997 499 FunFam Pyruvate kinase 345 486 - -
Nenu2g03997 499 Pfam Pyruvate kinase, alpha-beta domain 369 492 IPR015795 -
Nenu2g03997 499 PANTHER PYRUVATE KINASE 6 494 IPR001697 GO:0000287(InterPro)|GO:0004743(PANTHER)|GO:0004743(InterPro)|GO:0005737(PANTHER)|GO:0006096(InterPro)|GO:0006096(PANTHER)|GO:0030955(InterPro)
Nenu2g03997 499 SUPERFAMILY PK C-terminal domain-like 333 498 IPR036918 -
Nenu2g03997 499 Gene3D - 10 344 IPR040442 -
Nenu2g03997 499 Gene3D - 345 486 IPR036918 -
Nenu2g03997 499 SUPERFAMILY PK beta-barrel domain-like 77 176 IPR011037 -
Nenu2g03997 499 ProSitePatterns Pyruvate kinase active site signature. 224 236 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Nenu2g03997 499 Pfam Pyruvate kinase, barrel domain 10 334 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Nenu2g03997 499 FunFam Pyruvate kinase 155 344 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu2g03997 K00873 pyruvate kinase [EC:2.7.1.40]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4046718 Nenu Nenu2g03997 Nenu-Chr2:108030239 Nenu4g01099 Nenu-Chr4:39045957
4061975 Nenu Nenu3g02001 Nenu-Chr3:67487990 Nenu2g03997 Nenu-Chr2:108030239
4062107 Nenu Nenu3g02381 Nenu-Chr3:76083457 Nenu2g03997 Nenu-Chr2:108030239
4062839 Nenu Nenu4g01436 Nenu-Chr4:52882265 Nenu2g03997 Nenu-Chr2:108030239
4069129 Nenu Nenu2g03997 Nenu-Chr2:108030239 Nenu7g00029 Nenu-Chr7:675564