AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nenu2g04006 | ATGGGTCTCCCTTGTTTTCTCTTTCTTTTGCAGGAAATGGACTTCCTTGGTGTTTCCCTGATGGTCCTTCTGGCCATGTTGCAGACAGTTCATGGCTTTGGAAGTGGGTGGACTGATGCCCACGCTACATTCTATGGAGGTGGTGATGCTTCTGGTACAATGGGTGGAGCTTGTGGGTATGGAAATCTATACAGTCAAGGTTATGGAACGAATACAGCTGCACTGAGTACTGCTCTGTTCAACAACGGGTTGAGCTGTGGAGCTTGTTACGAGATCAAATGTGTAAATGATCCCAAATGGTGTTTACCAGGATCCATCATTATTACTGCAACAAACTTCTGCCCGCCAAACAATGCTCTCCCAAACAATGCAGGAGGGTGGTGCAACCCTCCCCTGCAGCACTTTGATCTTTCTCAGCCTGTCTTCCAACGCATTGCTCAGTACAAAGCAGGGATAGTCCCTGTTCAATACAGAAGAGTTGCTTGCGAGAAGACTGGTGGGATAAGGTTCACCATCAATGGCCACTCTTACTTCAACCTTGTGCTTATCACAAACGTTGGTGGAGCTGGTGATGTTGTGGCAGTCTCCATCAAAGGCTCTAGAACTGGTTGGCAAGCTATGTCTCGAAACTGGGGCCAAAACTGGCAGAGCAACTCTTACCTTAATGGTCAGGCTCTCTCCTTCAAGGTCACAACAAGTGATGGACAAACTGTAGTCTCCAACAACGCAGCTCCTGCCAACTGGGCTTTTGGCCAAACCTACAGTGGCGGACAGTTTTAA | 780 | 48.08 | MGLPCFLFLLQEMDFLGVSLMVLLAMLQTVHGFGSGWTDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPKWCLPGSIIITATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQRIAQYKAGIVPVQYRRVACEKTGGIRFTINGHSYFNLVLITNVGGAGDVVAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGQTVVSNNAAPANWAFGQTYSGGQF | 259 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nenu2g04006 | 259 | PRINTS | Expansin signature | 67 | 81 | IPR002963 | GO:0009664(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin signature | 213 | 234 | IPR002963 | GO:0009664(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin signature | 94 | 105 | IPR002963 | GO:0009664(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin signature | 125 | 142 | IPR002963 | GO:0009664(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin signature | 178 | 199 | IPR002963 | GO:0009664(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin signature | 142 | 155 | IPR002963 | GO:0009664(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin signature | 106 | 116 | IPR002963 | GO:0009664(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin signature | 166 | 178 | IPR002963 | GO:0009664(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin signature | 242 | 258 | IPR002963 | GO:0009664(InterPro) | |
| Nenu2g04006 | 259 | CDD | DPBB-EXPA-N | 36 | 162 | - | - | |
| Nenu2g04006 | 259 | FunFam | Expansin | 27 | 163 | - | - | |
| Nenu2g04006 | 259 | Pfam | Lytic transglycolase | 72 | 157 | IPR009009 | - | |
| Nenu2g04006 | 259 | Pfam | Expansin C-terminal domain | 168 | 245 | IPR007117 | - | |
| Nenu2g04006 | 259 | FunFam | Expansin | 167 | 259 | - | - | |
| Nenu2g04006 | 259 | Gene3D | - | 24 | 163 | IPR036908 | - | |
| Nenu2g04006 | 259 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 177 | 256 | IPR007117 | - | |
| Nenu2g04006 | 259 | SMART | dpbb-1 | 72 | 157 | IPR007112 | - | |
| Nenu2g04006 | 259 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 55 | 167 | IPR007112 | - | |
| Nenu2g04006 | 259 | PRINTS | Expansin-Lol pI family signature | 150 | 166 | IPR007118 | GO:0005576(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin-Lol pI family signature | 242 | 256 | IPR007118 | GO:0005576(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin-Lol pI family signature | 76 | 94 | IPR007118 | GO:0005576(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin-Lol pI family signature | 204 | 218 | IPR007118 | GO:0005576(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin-Lol pI family signature | 54 | 72 | IPR007118 | GO:0005576(InterPro) | |
| Nenu2g04006 | 259 | PRINTS | Expansin-Lol pI family signature | 36 | 51 | IPR007118 | GO:0005576(InterPro) | |
| Nenu2g04006 | 259 | SUPERFAMILY | PHL pollen allergen | 164 | 255 | IPR036749 | - | |
| Nenu2g04006 | 259 | PANTHER | EXPANSIN-A15 | 21 | 259 | IPR002963 | GO:0009664(InterPro) | |
| Nenu2g04006 | 259 | Gene3D | - | 166 | 259 | IPR036749 | - | |
| Nenu2g04006 | 259 | SUPERFAMILY | Barwin-like endoglucanases | 36 | 185 | IPR036908 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nenu2g04006 | K20628 | expansin |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 4046724 | Nenu | Nenu2g04006 | Nenu-Chr2:108161487 | Nenu4g02177 | Nenu-Chr4:70104095 | |
| 4060080 | Nenu | Nenu1g04819 | Nenu-Chr1:136035819 | Nenu2g04006 | Nenu-Chr2:108161487 | |
| 4069133 | Nenu | Nenu2g04006 | Nenu-Chr2:108161487 | Nenu7g00022 | Nenu-Chr7:584484 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Nenu1g00311 | . | 40 | 273 | Expansin gene family | AT1G65680 | 61.017 | 3.84e-108 | 312.0 | |
| Nenu1g00401 | . | 5 | 247 | Expansin gene family | AT4G17030 | 41.365 | 1.80e-57 | 182.0 | |
| Nenu1g00496 | . | 43 | 249 | Expansin gene family | AT4G17030 | 46.635 | 2.46e-62 | 201.0 | |
| Nenu1g00663 | . | 25 | 273 | Expansin gene family | AT1G65680 | 68.526 | 1.27e-123 | 351.0 | |
| Nenu1g02912 | . | 1 | 260 | Expansin gene family | AT4G28250 | 70.992 | 1.15e-140 | 394.0 | |
| Nenu1g02935 | . | 3 | 247 | Expansin gene family | AT3G15370 | 62.097 | 1.03e-117 | 335.0 | |
| Nenu1g04664 | . | 1 | 260 | Expansin gene family | AT4G28250 | 71.756 | 4.66e-142 | 397.0 | |
| Nenu1g04819 | . | 5 | 145 | Expansin gene family | AT2G03090 | 72.917 | 1.70e-73 | 219.0 | |
| Nenu1g06818 | . | 48 | 249 | Expansin gene family | AT1G69530 | 58.416 | 1.44e-68 | 208.0 | |
| Nenu2g00043 | . | 8 | 253 | Expansin gene family | AT2G40610 | 82.731 | 5.01e-153 | 424.0 | |
| Nenu2g00606 | . | 6 | 257 | Expansin gene family | AT2G39700 | 86.111 | 1.31e-167 | 462.0 | |
| Nenu2g02213 | . | 6 | 257 | Expansin gene family | AT2G39700 | 84.524 | 2.26e-165 | 456.0 | |
| Nenu2g04006 | . | 1 | 252 | Expansin gene family | AT2G03090 | 78.968 | 1.81e-152 | 423.0 | |
| Nenu3g02390 | . | 39 | 264 | Expansin gene family | AT3G03220 | 80.088 | 9.58e-143 | 399.0 | |
| Nenu3g03140 | . | 12 | 251 | Expansin gene family | AT5G56320 | 60.833 | 9.15e-108 | 310.0 | |
| Nenu3g03141 | . | 39 | 260 | Expansin gene family | AT5G39270 | 68.919 | 4.70e-115 | 328.0 | |
| Nenu3g03243 | . | 1 | 250 | Expansin gene family | AT1G69530 | 85.657 | 3.28e-158 | 439.0 | |
| Nenu4g00984 | . | 11 | 255 | Expansin gene family | AT4G01630 | 72.245 | 3.35e-138 | 387.0 | |
| Nenu4g00985 | . | 1 | 255 | Expansin gene family | AT4G01630 | 74.118 | 2.35e-143 | 400.0 | |
| Nenu4g00986 | . | 10 | 255 | Expansin gene family | AT4G01630 | 74.494 | 1.70e-139 | 390.0 | |
| Nenu4g01313 | . | 39 | 265 | Expansin gene family | AT3G03220 | 82.379 | 1.61e-146 | 409.0 | |
| Nenu4g02177 | . | 1 | 250 | Expansin gene family | AT1G69530 | 86.056 | 7.49e-158 | 436.0 | |
| Nenu5g00098 | . | 7 | 253 | Expansin gene family | AT2G40610 | 82.996 | 4.71e-153 | 424.0 | |
| Nenu5g02929 | . | 18 | 252 | Expansin gene family | AT1G20190 | 77.021 | 1.45e-142 | 400.0 | |
| Nenu5g02977 | . | 47 | 265 | Expansin gene family | AT4G38400 | 64.384 | 4.44e-106 | 311.0 | |
| Nenu5g03087 | . | 14 | 254 | Expansin gene family | AT4G38210 | 67.769 | 1.20e-123 | 350.0 | |
| Nenu6g00178 | . | 5 | 264 | Expansin gene family | AT3G45970 | 61.154 | 1.01e-111 | 320.0 | |
| Nenu6g00276 | . | 16 | 252 | Expansin gene family | AT1G20190 | 76.793 | 2.14e-140 | 392.0 | |
| Nenu6g00877 | . | 201 | 254 | Expansin gene family | AT1G65680 | 58.182 | 4.97e-13 | 59.3 | |
| Nenu6g00878 | . | 40 | 273 | Expansin gene family | AT1G65680 | 67.797 | 9.59e-120 | 342.0 | |
| Nenu6g00938 | . | 8 | 249 | Expansin gene family | AT4G17030 | 41.406 | 1.49e-58 | 184.0 | |
| Nenu7g00022 | . | 6 | 252 | Expansin gene family | AT2G03090 | 70.968 | 7.20e-144 | 402.0 |