AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu2g04016 ATGGAGTTGAATGAGTGGCAGCAGACATGGAGTGGAGGGCTTGATAGAATACTGTGTATGCAAGGAGGAGACGACGACGGCAGCTACGCCAGGAACTCAGACGCCCCTGCATCTGCCATCAGCTTATCAAAGCCATTGCTGATTGCAGCCATTCAATCCATGCGGCTTTTCCACGGGGAGGCGTCACTGAGGATTGCAGACTTGGGCTGTGCGACAGGGTTCAACACCTTGTCTACCATCGACTTGGTCATCGACACCCTGAGGGGGCGCTATAACAAAGACTGTGCTTTCGAGCCTGAATTCGAGGCTTTCTTTTCTGATCTCCCTTCCAACGATTTTAATTCCCTCTTCCGATCCTTGCCTCCATTCATTGATAACAAGAAGAAGCGTTACTATGCAGCTGGAGTGCCGGGATCCTTCTACCACCGCCTCTTTCCTAAAGGGAAGCTTCATGTGGCTGTCAGCTTAAGCGCCCTACACTGGCTTTCTCGGGTATGGCCTATACCAGAGGTGGTGTTGGATAAGAGATCACTGGCTTGGAACAAAGGAAGAGCTTGGATTGATGGAGCAAAGAAAGAGGTTGTGGAAGCCTATGCTAAGCAATCCGATGAGGATTTGAGGGCCTTCCTACAATGCCGAAGAGAAGAGATTGTCGAGGGAGGAACGTTGTTTATATTGATGGCCGGACGGCAAGGCTTGGAGCAGCCGGAGAACCAGTTAGGTGACCCTGATTCAAGGGCCAAGCACCCTTTCACAAGTTCCATGGATCAGGCATGGGAAGACCTCTTAAATGAGGGATTGATTGATGAAGAGACAAGAGACACATTCAACATTCCTGCATACATGAGAAGTATAGAAGAAGTTGAGAAGGCTTTCCATCAATGTGGTGGATTTGAGATACAAAGATTGGAGTACCAGAGAATAGTAGAGCATTCAAAGGAGAAACAAGAGGAGTGGATAAGGGATCCAGTTTCCTATGGTAGAGCCAAAGCCAATCTAGTCCGGGCGACACTCAGACCTATAGTTGAGGCTCACCTTGGACCCAAACTCTCTGAAGAGCTATTCAAAAGATTCGAAAAGAGGGCCTCTGCTGACATAGAAATGCTTCACAAAACATGCTTTTATGGTGTCATTGTTGTATGTGCAATCAGGAAGTGA 1158 48.19 MELNEWQQTWSGGLDRILCMQGGDDDGSYARNSDAPASAISLSKPLLIAAIQSMRLFHGEASLRIADLGCATGFNTLSTIDLVIDTLRGRYNKDCAFEPEFEAFFSDLPSNDFNSLFRSLPPFIDNKKKRYYAAGVPGSFYHRLFPKGKLHVAVSLSALHWLSRVWPIPEVVLDKRSLAWNKGRAWIDGAKKEVVEAYAKQSDEDLRAFLQCRREEIVEGGTLFILMAGRQGLEQPENQLGDPDSRAKHPFTSSMDQAWEDLLNEGLIDEETRDTFNIPAYMRSIEEVEKAFHQCGGFEIQRLEYQRIVEHSKEKQEEWIRDPVSYGRAKANLVRATLRPIVEAHLGPKLSEELFKRFEKRASADIEMLHKTCFYGVIVVCAIRK 385
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu2g04016 385 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 17 380 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Nenu2g04016 385 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 16 379 IPR029063 -
Nenu2g04016 385 Gene3D - 17 367 IPR042086 -
Nenu2g04016 385 Pfam SAM dependent carboxyl methyltransferase 51 384 IPR005299 GO:0008168(InterPro)
Nenu2g04016 385 Gene3D Vaccinia Virus protein VP39 32 309 IPR029063 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu2g04016 K18886 gibberellin A4 carboxyl methyltransferase [EC:2.1.1.276]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4040459 Nenu Nenu1g02387 Nenu-Chr1:66187546 Nenu2g04016 Nenu-Chr2:108410276
4046730 Nenu Nenu2g04016 Nenu-Chr2:108410276 Nenu4g01772 Nenu-Chr4:61196051
4061458 Nenu Nenu2g04016 Nenu-Chr2:108410276 Nenu1g05179 Nenu-Chr1:145038498