AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu2g04018 ATGATCCGTTATAGGATCAGAAGAGAGGGAGTTGATGGAGCAGAAGAGAGAGGAGAAGAGAGTGAGAACACTGAGGAAGAGAAAAATGAAAATCGAAGGAGAAATGGCGGGAGAGAGAAGCGGAAACAAGAAATAAAGGTAGACACGTCCCCTCATGCGTCTGCTGCCACTGGATTCTTGGAGGAAAAAAAGAGAATTGTCCTTCCACGGAAACTGTTGATCAATATGACATCAGTTTGCCCATTTGCTAAATCAGCACGACCTGATGATGCCTCTCCAAGGAAGTCCATGGATAACCATAGCAGAGACCAGGCTGAACCTGGGGGCAAGGTTAGGAGGGAGTCTGATGATTCTGCTAGTGTATCTCCAAAGTGTCCATTTGGTTATGACTCTCATACGTTTAAGTTGGGCCCCCTAAGTTGTGTGATTTGCCAGGCCCTTCTCTATGAAAGTTCTAAATGTGTGCCTTGTTCACACAAATATTGCAAAGCATGCATATCACGCTTCAAGGACTGTCCATTGTGTGGTGCTGACATAGAGAAGATTGAGCCTGATACAGATCTTCAGGATGTTGTCAACCGCTTCATTGATGGTCATGCTAGAATCAAGAGGCCTCATGTTAAGACAAATATGGAGGAAGTAGGATCTGAAAACAAAATTGTGATATATGAAGATGTTTCTTTGGAGAGGGGTGCTTTCTTGGTACAACAAGCAATGAGGGCGTTTCGTGCCCAGAATATAGAAAGTGCCAAATCAAGACTTAGTTTATGTGCAGAGGACATCCGGGAGCAGCTAGAAAGATTGGGAAATACCCCAGAGCTGTGTTCCCAACTAGGGGCAGTCCTTGGAATGCTTGGTGACTGCTGTCGATCAATGGGAGATTCTGGGTGCGCAATTTCTTTCTATGAAGAGAGTGTTGATTTTCTTTCAAAACTGTCAATGGATGACTTGGAGGTGACACATGCTCTTTCTGTCTCCCTTAATAAAATTGGTGATCTCAAATACTATGATGGAAACATCCAAGCTGCTAGATCCTACTATAATCGATCTTTAGATGTCCGACGTAATGCCATCAAAGACCGTTCTGATGTTCCATCTCAGGTTTTGGATGTTGCGGTATCTCTAGCCAAAGTTGCTGATGCAGAAAGGAGCCTTGGGAACGAGGATTTGGCTCTTCGTGGATTTGAAGAAGCAATAAAATGCTTGGAGTCATTGTCACCGAGTCCCAAAGAGACTGGCCTTGAACAACGGCGCCTTTCAGTGCTTGAGTTCCTTCACAACCAACTTCCAGGAAGCAGAGATATGTCCGTCTGA 1314 44.6 MIRYRIRREGVDGAEERGEESENTEEEKNENRRRNGGREKRKQEIKVDTSPHASAATGFLEEKKRIVLPRKLLINMTSVCPFAKSARPDDASPRKSMDNHSRDQAEPGGKVRRESDDSASVSPKCPFGYDSHTFKLGPLSCVICQALLYESSKCVPCSHKYCKACISRFKDCPLCGADIEKIEPDTDLQDVVNRFIDGHARIKRPHVKTNMEEVGSENKIVIYEDVSLERGAFLVQQAMRAFRAQNIESAKSRLSLCAEDIREQLERLGNTPELCSQLGAVLGMLGDCCRSMGDSGCAISFYEESVDFLSKLSMDDLEVTHALSVSLNKIGDLKYYDGNIQAARSYYNRSLDVRRNAIKDRSDVPSQVLDVAVSLAKVADAERSLGNEDLALRGFEEAIKCLESLSPSPKETGLEQRRLSVLEFLHNQLPGSRDMSV 437
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu2g04018 437 MobiDBLite consensus disorder prediction 1 53 - -
Nenu2g04018 437 SMART ring-2 141 175 IPR001841 -
Nenu2g04018 437 MobiDBLite consensus disorder prediction 24 48 - -
Nenu2g04018 437 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 137 219 IPR013083 -
Nenu2g04018 437 PANTHER RING FINGER PROTEIN 41, 151 115 429 - GO:0016567(PANTHER)|GO:0061630(PANTHER)
Nenu2g04018 437 Coils Coil 11 31 - -
Nenu2g04018 437 Gene3D Tetratricopeptide repeat domain 228 419 IPR011990 GO:0005515(InterPro)
Nenu2g04018 437 SUPERFAMILY RING-U-box 136 183 - -
Nenu2g04018 437 ProSiteProfiles Zinc finger RING-type profile. 141 175 IPR001841 -
Nenu2g04018 437 ProSitePatterns Zinc finger RING-type signature. 157 166 IPR017907 -
Nenu2g04018 437 MobiDBLite consensus disorder prediction 1 17 - -
Nenu2g04018 437 MobiDBLite consensus disorder prediction 84 122 - -
Nenu2g04018 437 MobiDBLite consensus disorder prediction 88 119 - -
Nenu2g04018 437 SUPERFAMILY TPR-like 273 407 IPR011990 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu2g04018 - -