AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu2g04023 ATGGACGCCTATGAAGCTACAAGGATCGTCTTCTCGAGAATCCAGAGCCTAGATCCCGAGAATGCCTCTAAGATCATGGGACTTCTCCTCATTCAAGATCACGGAGAGAAGGAGATTATCCGTCTGGCCTTCGGACCCGAGGCCCTAGTCCACTCTGTGGTCCTCAAGGCCCGAAAGGAACTGGGACTTTCGTCGAACACCCCGTCGACGCCATCCACGCCTTCGTCTCCGTCTCCGTTCCTCTCCAGCAGCTCCAACTCCTCCGTTTTCAGACAGGATTCTTCTTCGCGGATGCTTGGCGGCGGCCTCAGCCTTGCTCATTCCCTCTCCGTGCAATCATCGCCTTCTCTGTCGTCGTCTTGGACTGCTTCCGCCTTCTCAGATATCCCCAACCAGGACGACCTTGTAAGTCCCGGTTCCAGCTCATCTGCCTCCTACTCGGCGGGAATAAATGGCATCAACAACATGGTCGTGGGTTCTCCGCCCGCATCATCTTTGTTAGCTACTGCTTCGGCTTCTCCTTTCTATGGCGGTGGTAGCGATCTGATTGATGAGCTTCAGCTCCAAGACCAGCTGTCATTCCTCAACGATGCCTCCCCCACACATGGGCTAAAAAATGCAGCTGACATGTTCTATCCACAATCCGAATCAGCCAGCGGAACCAGTGATTCTATGATCTTCCCCTCTTACGCCGCCGCCGCCGCCAGCTGGGGAGCTTCTATCAATGGCCACCACCGGCGTAGCTGTTCCGTCACTGACGTCTTGGTCTCTGATGCTGGGGCTGGGTTTGGGTGGAAGCCATGCCTTTACTTTGCTAGGGGTTACTGCAAGAACGGAACCAGCTGCCGGTTCCTTCATGGCTTACCCGATTCCCCTACGGCCGTGTCTGATACTGCCTCTTTGGTGGGCTCTTCTGGAAAGTTAGACATCGTGGAGCAATGCCAAGAGCTGCTCAGATCTAAGGCCGCCGCGCAACAAAGGTTGGGTACAGTGTCCCAGCTCATGGCTTCCCCTCCTTTCCCCTTCACCACCCCAGCCGATGGCACCGGAAAATGCATGAATTTCTTGCTTCAGCAGCAACAGAATGATAGCATTCAAAGAGCGGCAGCAACCATGATGATGAGTGAAGACGTACACAAGTTCGTTCGACCTCGACTGGAAAGGACGGAGTTCTCGACGACAAACGGTGGAGGGATGGCCAGCCCGGGATCCAGGCAGATCTACTTGACGTTCCCGGCTGACAGCACCTTTAGAGAAGAAGATGTGTCTAATTACTTCAGCATTTATGGGCCTGTACAGGATGTGAGGATCCCATATCAGCAGAAACGAATGTTTGGGTTTGTCACATTTGTCTACCCGGAGACGGTGAAGCTCATTCTGGCCAAGGGGAACCCGCATTTCGTCTGTGATGCTCGCGTGCTTGTCAAACCATACAAGGAAAAGGGAAAAGTCCCAGACAAGTACAGGAAGCAGCAGCAACAGCAGCAGCAGACGGATGGAGGAGGCTTCTCGACTTGTACTACCCCTACTAGTCTCGATTCCGGAGATGCCTACGAACTGCAACTGGGAGCAGCAAGGATGTTCTACAACACACAGGACGTGCTACTGAGAAGGAAGTTAGAGGAGCAGGCTGACTTGCAACAAGCCATAGAGCTCCAAGGACGAAGGTTGATGGGTCTGCATCTTTTCGAAGTGAAGAAGCATCACCACCGCACTATGTCTGCCGGTCCTCCCGTTTCCTCCACGCACTCTTACGTTAATCAAAGTCTCGTCCTTCCTTCTGATTGCAGCAGCAGCCCCGAAACGCCCGACGAGAACTGTGTCAGCCCTGCCACTAGCATTTCTGCCGCAGCCACTACTGCTGCTCCTGCCGATCAGCAGTCGCAGCAGCAAGCATTGAATTCTCACGAAGAATCCAGTGAAAACAAGGAGGTGATCCGTGACGTTGAAGACTCTGACTTCCAAGATGGGGTAGAGCACAATCTCCCTGATAGTCCTTTTGCATCTCCTACTAAATCAGCGGGAGACCACTCTTCTTTCTTTTCCGCCCAGGAGGCCGAGAGGAGCATTGCTGCCTCTGCTTCATCTTCGTCTTCTACTTCCTCTCCACTGCCGACCACGTCTTCCTTGGACATTACTTCTTTCAAATCATGCTTCTTCCAAGTTCCCAGGTTCTCTTCTGGGCATGGAGCCATAGGATTGTAA 2205 53.24 MDAYEATRIVFSRIQSLDPENASKIMGLLLIQDHGEKEIIRLAFGPEALVHSVVLKARKELGLSSNTPSTPSTPSSPSPFLSSSSNSSVFRQDSSSRMLGGGLSLAHSLSVQSSPSLSSSWTASAFSDIPNQDDLVSPGSSSSASYSAGINGINNMVVGSPPASSLLATASASPFYGGGSDLIDELQLQDQLSFLNDASPTHGLKNAADMFYPQSESASGTSDSMIFPSYAAAAASWGASINGHHRRSCSVTDVLVSDAGAGFGWKPCLYFARGYCKNGTSCRFLHGLPDSPTAVSDTASLVGSSGKLDIVEQCQELLRSKAAAQQRLGTVSQLMASPPFPFTTPADGTGKCMNFLLQQQQNDSIQRAAATMMMSEDVHKFVRPRLERTEFSTTNGGGMASPGSRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQQQQTDGGGFSTCTTPTSLDSGDAYELQLGAARMFYNTQDVLLRRKLEEQADLQQAIELQGRRLMGLHLFEVKKHHHRTMSAGPPVSSTHSYVNQSLVLPSDCSSSPETPDENCVSPATSISAAATTAAPADQQSQQQALNSHEESSENKEVIRDVEDSDFQDGVEHNLPDSPFASPTKSAGDHSSFFSAQEAERSIAASASSSSSTSSPLPTTSSLDITSFKSCFFQVPRFSSGHGAIGL 734
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu2g04023 734 Gene3D - 408 507 IPR012677 -
Nenu2g04023 734 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 481 IPR000504 GO:0003723(InterPro)
Nenu2g04023 734 SUPERFAMILY RNA-binding domain, RBD 416 498 IPR035979 GO:0003676(InterPro)
Nenu2g04023 734 PANTHER RNA-BINDING (RRM-RBD-RNP MOTIFS) 1 678 - -
Nenu2g04023 734 MobiDBLite consensus disorder prediction 666 706 - -
Nenu2g04023 734 Pfam RNA recognition motif 417 461 IPR000504 GO:0003723(InterPro)
Nenu2g04023 734 MobiDBLite consensus disorder prediction 618 636 - -
Nenu2g04023 734 SMART rrm1-1 406 476 IPR000504 GO:0003723(InterPro)
Nenu2g04023 734 MobiDBLite consensus disorder prediction 484 508 - -
Nenu2g04023 734 MobiDBLite consensus disorder prediction 63 95 - -
Nenu2g04023 734 Gene3D - 261 354 - -
Nenu2g04023 734 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872(InterPro)
Nenu2g04023 734 SMART c3hfinal6 264 288 IPR000571 GO:0046872(InterPro)
Nenu2g04023 734 CDD RRM-AtC3H46-like 407 476 IPR034365 -
Nenu2g04023 734 MobiDBLite consensus disorder prediction 489 508 - -
Nenu2g04023 734 SUPERFAMILY CCCH zinc finger 265 290 IPR036855 GO:0046872(InterPro)
Nenu2g04023 734 MobiDBLite consensus disorder prediction 637 658 - -
Nenu2g04023 734 MobiDBLite consensus disorder prediction 618 706 - -
Nenu2g04023 734 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 412 483 - -
Nenu2g04023 734 Pfam Torus domain 259 293 IPR032297 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu2g04023 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4041688 Nenu Nenu1g04010 Nenu-Chr1:111053536 Nenu2g04023 Nenu-Chr2:108634077
4046735 Nenu Nenu2g04023 Nenu-Chr2:108634077 Nenu5g01089 Nenu-Chr5:41883273