AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g00984 ATGGCGCTAGCAGTTGCAGTTAGCTTGACCACCCCGACGACGTCCCTGCAACCCGTCTCGAGAAAGCTCTCTCACAACTTCCCTGTTGTCTACGCCGTTCATGCGGCAGATCCTGCGAAGAAACCCGCATCATCTGATGTTGTCGGAATTAAGGTTGGGTCGTCGAATTGGAGTCCTGATAGCTGGAAATCTAGGAAAGCTCTTCAAATTCCGGTTTACCCAAACCAAGAAGAACTTAACAAGGTTTTGGAGGAACTTGAGAGTTTCCCTCCACTTGTGTTCGCCGGGGAAGCGAGGAAGTTGGAGGAGCGACTCGCAAATGCTGCCGTTGGGAAGGCTTTTCTGCTTCAGGGTGGAGATTGCGCCGAGAGTTTCAAGGAATTCAGCGCCAATAACATTAGAGATACATTGAGGGTTTTGTTGCAGATGGGGGTGGTCCTCACCTTTGGTGCTCAGATGCCCATCATCAAGGTGGGACGGATGGCAGGCCAATTTGCAAAACCTCGGTCTGAACCATTTGAGATCAAAGATGGGGTTAAGCTCCCCAGTTATCAGGGAGACAATATCAATAGTGATGCTTTCGATGAAAAATCCAGAGCACCAGATCCCCAAAGGCTGATAAAAGCATATTCTCAGTCTGGATGCACATTGAATCTTCTCAGAGCATTTACTACTGGTGGATATGCAGCTATGCAAAGAGTCTCGCAGTGGAACCTTGATTTCACAGAACACAGTGAGCAAGGAGACAGGTACATGGAACTTGCACAGAGGGTAGATGAAGCTCTTGGATTCATGGCTGCTGCTGGACTTACTCTAGATCATCTCATAATGACCACCACTGAATTCTGGACATCTCATGAATGCCTTCATCTGCCATATGAGCAAGCATTGACAAGGGAGGATTCAACAACCGGTCTATACTATGATTGCTCTGCTCACATGCTTTGGGTGGGTGAGAGAACTCGGCAGTTGGATGGAGCTCATGTTGAATTCCTTAGGGGTGTAGCTAACCCTCTAGGTATAAAGGTGAGTGACAAGATGGATCCAAAGGAGCTTGTAAAATTATGTGAGATTCTCAACCCTCACAACAGGGCTGGGAGGCTGACAATAATCACCCGAATGGGGGCAGAAAACATGCGGGTGAAACTTCCCCATCTGATAAGAGCGGTGCGCCAGGCTGGGCTTATTGTAACATGGGTGAGTGATCCTATGCATGGGAATACCATCAAGGCTCCATGTGGCCTCAAGACACGTTCATTTGATTCGATAAGGTCGGAGTTGAGGGCATTCTTTGATGTTCATGAACAAGAAGGGAGCCACCCAGGAGGCGTTCATTTGGAGATGACTGGTCAGAACGTCACAGAATGCATTGGAGGATCAAGGACAGTGACTTTTGATGACTTGAGCTCCCGATACCATACACATTGTGACCCCAGGCTCAATGCTTCACAGTCCCTAGAGTTGGCATTCGCCATTGCTGAGAGGCTGAGAAAGAGAAGAATAAGATCCGGCAAGTCCTTCCTCAAAAGCCAGCAGGAAAATGGTTCTGTTGTCTAG 1557 48.3 MALAVAVSLTTPTTSLQPVSRKLSHNFPVVYAVHAADPAKKPASSDVVGIKVGSSNWSPDSWKSRKALQIPVYPNQEELNKVLEELESFPPLVFAGEARKLEERLANAAVGKAFLLQGGDCAESFKEFSANNIRDTLRVLLQMGVVLTFGAQMPIIKVGRMAGQFAKPRSEPFEIKDGVKLPSYQGDNINSDAFDEKSRAPDPQRLIKAYSQSGCTLNLLRAFTTGGYAAMQRVSQWNLDFTEHSEQGDRYMELAQRVDEALGFMAAAGLTLDHLIMTTTEFWTSHECLHLPYEQALTREDSTTGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPKELVKLCEILNPHNRAGRLTIITRMGAENMRVKLPHLIRAVRQAGLIVTWVSDPMHGNTIKAPCGLKTRSFDSIRSELRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFAIAERLRKRRIRSGKSFLKSQQENGSVV 518
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g00984 518 Pfam Class-II DAHP synthetase family 57 493 IPR002480 GO:0003849(InterPro)|GO:0009073(InterPro)
Nenu6g00984 518 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 32 505 IPR002480 GO:0003849(InterPro)|GO:0009073(InterPro)
Nenu6g00984 518 NCBIfam 3-deoxy-7-phosphoheptulonate synthase class II 57 500 IPR002480 GO:0003849(InterPro)|GO:0009073(InterPro)
Nenu6g00984 518 Gene3D Aldolase class I 90 252 IPR013785 -
Nenu6g00984 518 Gene3D Aldolase class I 253 498 IPR013785 -
Nenu6g00984 518 FunFam Phospho-2-dehydro-3-deoxyheptonate aldolase 246 498 - -
Nenu6g00984 518 SUPERFAMILY Aldolase 54 497 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g00984 K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:107674036 Nenu6g00984 Nenu-Chr6:35196067 dispersed
Nenu Nenu-Chr5:66926305 Nenu6g00984 Nenu-Chr6:35196067 dispersed
Nenu Nenu-Chr1:13354146 Nenu6g00984 Nenu-Chr6:35196067 wgd