AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g00999 ATGGCAGTTGCCACCGTGTCTTCACGCTTTCCACTCGACTTCCGAATGGTGTCGACTCCCCAATCAACAACAAGTACAAATTCGAAACGAACCCTAGCTTCTTCGGCTGGGGTTTCCGTCAAAGCATCTCTAACCAGCAATCTCATTGCCCCTTTCATCGGTGGGAGCGTTTCCGCTGATTTTTGTGGTCAGAAAATCCGTCCTGCGTCCCTCAACCCGTCGTTAACTTTCTCTTCTGGTTCTCGCGGCAAAAGAGGGGTCGTCACCATGGTCATTCCTTTCTTAAGAGGAAGTGCATGGGAGCAACCTCCTCCAGATTTAGCATCTTACTTGTATAAGAATCGAATTGTATATTTGGGCATGTCTCTTGTTCCTTCTGTCACAGAATTGATCCTAGCAGAATTCTTATACCTTCAGTATGAAGATGATCAGAAGCCAATTTACCTCTACATTAACTCCACTGGGACAACCAAGGGTGGGGAGAAGTTGGGTTATGAGACAGAGGCATTTGCAGTCTATGATGTAATGAGGTATGTTAAGCCACCCATTTTTACACTGTGTGTTGGTAATGCTTGGGGAGAAGCAGCTTTGCTTCTGGCTGCTGGAGCAAAGGGAAACCGTTCGGCTTTGCCCTCTTCTACAATAATGATTAAGCAGCCAATTGCAAGATTTCAAGGTCAGGCAACAGATATTGATCTTGCAAGAAAAGAAGTAAAGAATGTGAAGGAGGAGTTGGTTAATCTCTACTCAAGGCATATAGGGAAATCACCAGAGCAAATAGAAGAAGATATCAGGCGTCCGAAATATTTCAGCCCTAGTGAAGCGGTTGAATATGGTATTATTGACAAGGTATTATATAATGAACGGGCAAGTGAAGATCGTGGTGTTGTTTCTGACCTGAAAAAAGCAAACCTTATTTAA 921 43.97 MAVATVSSRFPLDFRMVSTPQSTTSTNSKRTLASSAGVSVKASLTSNLIAPFIGGSVSADFCGQKIRPASLNPSLTFSSGSRGKRGVVTMVIPFLRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDDQKPIYLYINSTGTTKGGEKLGYETEAFAVYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIKQPIARFQGQATDIDLARKEVKNVKEELVNLYSRHIGKSPEQIEEDIRRPKYFSPSEAVEYGIIDKVLYNERASEDRGVVSDLKKANLI 306
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g00999 306 CDD S14-ClpP-2 106 284 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Nenu6g00999 306 Pfam Clp protease 106 286 IPR023562 -
Nenu6g00999 306 Coils Coil 231 251 - -
Nenu6g00999 306 PRINTS Clp protease catalytic subunit P signature 146 166 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Nenu6g00999 306 PRINTS Clp protease catalytic subunit P signature 206 225 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Nenu6g00999 306 PRINTS Clp protease catalytic subunit P signature 263 282 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Nenu6g00999 306 PRINTS Clp protease catalytic subunit P signature 185 202 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Nenu6g00999 306 PRINTS Clp protease catalytic subunit P signature 106 121 IPR001907 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Nenu6g00999 306 SUPERFAMILY ClpP-crotonase 101 289 IPR029045 -
Nenu6g00999 306 FunFam ATP-dependent Clp protease proteolytic subunit 81 289 - -
Nenu6g00999 306 Gene3D - 79 293 - -
Nenu6g00999 306 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 78 292 IPR023562 GO:0004176(PANTHER)|GO:0004252(PANTHER)|GO:0006515(PANTHER)|GO:0009368(PANTHER)|GO:0051117(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g00999 K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr2:105888106 Nenu6g00999 Nenu-Chr6:35425147 transposed
Nenu Nenu-Chr4:14833339 Nenu6g00999 Nenu-Chr6:35425147 transposed
Nenu Nenu-Chr1:13778660 Nenu6g00999 Nenu-Chr6:35425147 wgd