AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nenu6g01008 | ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGTACCCCTCTTTGGCGTAATGGGCCACCGGAAAAGCCAATTCTATGCAATGCATGTGGATCTCGATGGCGAACAAAGGGAACACTTGCAAACTACACCCCTTTACATGCTCGAGTGGAGACTGATGATTATGAGGACTATAAGGCTCCAAAAGTAAAGAGCATATCTATTAAGGCCAAAGAGGCAAAGTTGCATAAGAGAAAGAAAAGTCATGATAACATGATAGTTGGAAGGGGAGCCCCTGAATATGATCAAACCTTTCGGAAGGGTCTTGAAGAGGATACTAGTAATAGATCAAGTTCAGGATCAGCCATATCTTACTCTGAGGGTTGTGCACAATTTGGTGGTACAGATGCAAGTGATTTCACAGGTCCACCTCAATCCATGGTGTGGGATACACTTGTTCCATCAAGGAAGAGGACTTGTGTGAGTCGCCCAAAGCCATCTCCGGTTGAGAAGCTTACAAAAGATCTATGCTCCATTTTACATGAGCAACAAGCATCTTCTTATTTCTCGGGATCTTCAGAAGAAGACTTGCTTTTCGAAAGCGAGACCCCAATGGTTTCTGTTGAGATAGGACATGGAAGTGTTCTCATCAAGCATCCAGGATCAGTCACCCGAGAGGAAGAATCTGAAGCCAGTTCCCTTTCAATGGATAACAAACCATACACAGTAAATGAAGCTTACTCAGGTTCTGCATCCATTCTTATACATAGTAACAAGGGTATATGCTTTCCAACTCTTGGCAATGAGAAATTGAAGAAGTCCACAGGACAGGACACAGAACAAGATCAGATGAAGAGGGATAAGACTCTCTTTGAGAAGTCACAAATTCTGCGACATCGTAATTCACCGCTGAGATCCATAAATTTAAAAGATGTTGTTAGCTTTGAGGAGTTTGCAAATCATTTGACGCATGAAGAACAGCAGCAACTGGTGAAGTATCTACCTTCTACAGATACTGCTAGACTTCCTGACAGCCTTAAGAGCATGTTTGATAGCCCTCAATTCAAGGAGAACTTATCCTCATTCCAGAAATTGCTTGCAGAAGGAGTCTTTGATCTCTCTTTTCCTGGAGGGACAACTGAAGACTGTAAGACTCTGAAGCGGCTTCTGTTGGTCAATTTGGCAACGTCCAAATGGGTAGAACACTATAATCTGCTTAAGGATGTAAAAAGTAAAAAGGTTACAGGAGGGAAGGGGGTTGCAACAGGAAACAGTGTGCTTGGGTCAAGTGATTTTTCAGCCATCAAGAGACCACGTGATGGGCAATATCATAACTTTTCAGAGCCAAAAACCACAATCAAGAGTCCCAAAAGGGTGGGCATGAAGGCCAGCTATGACAATGATGGATCTTGCTTCAGTCCAGGAAGCCTATTTACTTTCCCTCCTGATGGAAGCACCCTCATGTTTGACTCTTTCCAGTATACTGATGACAGTTCTGATCAGGATCTACTGCTGGATGTGCCATCCAATGGATCCTTCCCACAGGCAGAGCTTCTACCCCCATCTTCAAGTTTCAGTGTGCAACAGGCTAGCACTAGTAGTTCAGTTCACTCGCATCTTATCCGTCCTTGA | 1617 | 43.78 | MGKQGPCYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARVETDDYEDYKAPKVKSISIKAKEAKLHKRKKSHDNMIVGRGAPEYDQTFRKGLEEDTSNRSSSGSAISYSEGCAQFGGTDASDFTGPPQSMVWDTLVPSRKRTCVSRPKPSPVEKLTKDLCSILHEQQASSYFSGSSEEDLLFESETPMVSVEIGHGSVLIKHPGSVTREEESEASSLSMDNKPYTVNEAYSGSASILIHSNKGICFPTLGNEKLKKSTGQDTEQDQMKRDKTLFEKSQILRHRNSPLRSINLKDVVSFEEFANHLTHEEQQQLVKYLPSTDTARLPDSLKSMFDSPQFKENLSSFQKLLAEGVFDLSFPGGTTEDCKTLKRLLLVNLATSKWVEHYNLLKDVKSKKVTGGKGVATGNSVLGSSDFSAIKRPRDGQYHNFSEPKTTIKSPKRVGMKASYDNDGSCFSPGSLFTFPPDGSTLMFDSFQYTDDSSDQDLLLDVPSNGSFPQAELLPPSSSFSVQQASTSSSVHSHLIRP | 538 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nenu6g01008 | 538 | Gene3D | - | 289 | 370 | IPR038108 | - | |
| Nenu6g01008 | 538 | Pfam | Asx homology domain | 283 | 367 | IPR028020 | - | |
| Nenu6g01008 | 538 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 5 | 45 | - | - | |
| Nenu6g01008 | 538 | MobiDBLite | consensus disorder prediction | 515 | 538 | - | - | |
| Nenu6g01008 | 538 | Pfam | GATA zinc finger | 7 | 41 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Nenu6g01008 | 538 | PANTHER | OSJNBB0038F03.10 PROTEIN | 1 | 370 | IPR044589 | - | |
| Nenu6g01008 | 538 | ProSitePatterns | GATA-type zinc finger domain. | 7 | 32 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Nenu6g01008 | 538 | ProSiteProfiles | GATA-type zinc finger domain profile. | 7 | 40 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Nenu6g01008 | 538 | SMART | GATA-3 | 1 | 53 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Nenu6g01008 | 538 | ProSiteProfiles | DEUBAD (DEUBiquitinase ADaptor) domain profile. | 295 | 407 | IPR044867 | - | |
| Nenu6g01008 | 538 | CDD | ZnF-GATA | 6 | 51 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Nenu6g01008 | 538 | Gene3D | - | 2 | 86 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nenu6g01008 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nenu | Nenu-Chr1:186933883 | Nenu6g01008 | Nenu-Chr6:35558852 | transposed | |
| Nenu | Nenu-Chr1:14023860 | Nenu6g01008 | Nenu-Chr6:35558852 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Nenu1g00507 | . | 1 | 507 | C2C2-Gata Transcription Factor family | AT4G17570 | 51.407 | 3.34e-147 | 431.0 | |
| Nenu1g00654 | . | 1 | 251 | C2C2-Gata Transcription Factor family | AT2G45050 | 51.119 | 9.59e-76 | 229.0 | |
| Nenu1g02216 | . | 58 | 260 | C2C2-Gata Transcription Factor family | AT3G24050 | 47.222 | 1.60e-47 | 158.0 | |
| Nenu1g03400 | . | 17 | 294 | C2C2-Gata Transcription Factor family | AT3G50870 | 45.296 | 3.88e-60 | 190.0 | |
| Nenu1g06155 | . | 1 | 217 | C2C2-Gata Transcription Factor family | AT4G17570 | 41.964 | 4.48e-42 | 149.0 | |
| Nenu1g06204 | . | 66 | 265 | C2C2-Gata Transcription Factor family | AT4G32890 | 39.423 | 3.95e-38 | 134.0 | |
| Nenu2g00372 | . | 20 | 263 | C2C2-Gata Transcription Factor family | AT4G32890 | 38.158 | 5.24e-51 | 171.0 | |
| Nenu2g02031 | . | 20 | 269 | C2C2-Gata Transcription Factor family | AT4G32890 | 38.033 | 3.53e-46 | 157.0 | |
| Nenu2g03824 | . | 86 | 132 | C2C2-Gata Transcription Factor family | AT2G18380 | 68.085 | 6.94e-18 | 77.8 | |
| Nenu2g03983 | . | 66 | 243 | C2C2-Gata Transcription Factor family | AT2G45050 | 38.333 | 3.87e-41 | 141.0 | |
| Nenu3g00286 | . | 1 | 142 | C2C2-Gata Transcription Factor family | AT3G06740 | 55.479 | 2.60e-39 | 128.0 | |
| Nenu3g01372 | . | 58 | 262 | C2C2-Gata Transcription Factor family | AT3G24050 | 50.926 | 5.15e-51 | 167.0 | |
| Nenu4g01694 | . | 36 | 135 | C2C2-Gata Transcription Factor family | AT5G49300 | 49.515 | 4.09e-20 | 80.1 | |
| Nenu4g01820 | . | 237 | 331 | C2C2-Gata Transcription Factor family | AT5G25830 | 71.579 | 1.92e-38 | 128.0 | |
| Nenu4g02717 | . | 28 | 124 | C2C2-Gata Transcription Factor family | AT5G49300 | 37.143 | 1.60e-12 | 63.2 | |
| Nenu5g01144 | . | 16 | 262 | C2C2-Gata Transcription Factor family | AT4G32890 | 36.719 | 3.63e-43 | 146.0 | |
| Nenu5g01680 | . | 1 | 332 | C2C2-Gata Transcription Factor family | AT5G66320 | 51.594 | 4.16e-84 | 257.0 | |
| Nenu5g02007 | . | 17 | 294 | C2C2-Gata Transcription Factor family | AT3G50870 | 45.139 | 5.40e-62 | 195.0 | |
| Nenu5g02756 | . | 73 | 189 | C2C2-Gata Transcription Factor family | AT2G45050 | 37.607 | 1.57e-10 | 58.5 | |
| Nenu6g00450 | . | 1 | 332 | C2C2-Gata Transcription Factor family | AT5G66320 | 50.575 | 7.26e-78 | 242.0 | |
| Nenu6g01008 | . | 1 | 507 | C2C2-Gata Transcription Factor family | AT4G17570 | 52.0 | 8.99e-147 | 430.0 | |
| Nenu6g01123 | . | 1 | 253 | C2C2-Gata Transcription Factor family | AT2G45050 | 51.765 | 6.41e-71 | 217.0 | |
| Nenu6g02141 | . | 14 | 331 | C2C2-Gata Transcription Factor family | AT5G25830 | 54.054 | 2.32e-98 | 292.0 | |
| Nenu6g02282 | . | 147 | 352 | C2C2-Gata Transcription Factor family | AT4G26150 | 37.668 | 5.48e-36 | 130.0 | |
| Nenu7g00046 | . | 79 | 248 | C2C2-Gata Transcription Factor family | AT2G45050 | 43.396 | 3.30e-40 | 141.0 | |
| Nenu8g00281 | . | 118 | 352 | C2C2-Gata Transcription Factor family | AT4G26150 | 38.4 | 2.56e-37 | 134.0 | |
| Nenu8g00451 | . | 14 | 331 | C2C2-Gata Transcription Factor family | AT5G25830 | 55.422 | 2.48e-101 | 300.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Nenu | ASXH | 5.7e-09 | No_clan | TF | C2C2-GATA |