AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g01039 ATGGCCGTAGCATCTCCGAGCAAAGAGAAGGCCGAACCTTCTCAGTCAATTGAGTCCATTCCTTCTTCTCCATTGGTTTCGAAATCGGGTTCAGACTCCGGTTCTGAAACCTCGTCTTTAGGTGTTGTTGATCCCTCTGATCGTAACGAGCAATCTGATTCGTCGGTTAACCACCGTAAAGATGTTGAAATCCAGTCTGCAGCATCTTTGAGAAGTGAAGAGTATCGGCAACTGTTTCGTCTTCCACCTGACGAAGTCCTTGTTCAAGACTTCAATTGTGCCCTCCAAGAGAATATCCTTCTTCAGGGTCATATGTACTTGTTTGTTCATCATATTTGCTTTTATTCTAACATTTTTGGGTTTGAGACAAAGAAAATAATCACCTTCCATGAGGTCACATGTGTACGGAAAGCAAAGACAGCAGCAATCTTCCCTAATGCCATAGAAATTCTAGCTGGGGGGAAAAAGTACTTCTTTGCGTCTTTTCTGTCCCGCGATGAAGCTTATCGTCTGATTGTTGATGGATGGGCTCAACATAATGATCGCGTGAATGCCCAAATAGATTGCCAGGAGTCAAAATCTGACAATGGCAGCCAAGATGCCCTTGTTATATTTGAAAACTCCAAGAGCTTCAAACGACAAACTAACGACCTTTATTCCATGGACAGAAACAAAGATTCTCGGGTTCTAGAAGAATGTAACCGTCTATCCAATGGTGAGGATGATATAAGTGTATCAACAAGACATTCAGAAACACTAGAGAATGGAGAAGAAGATCTAGAACCTGTTGCAAATGCTGAGACTTTGCTGTCTAGAAAGCCTTTCATATGGAAGCCTGAGGATGCCAATGCCCCTAAGATACCTGAGTGTTATACATTGGTTGCAGAGTCAAAATTTCCGATTCAGCTAGAGGAGTTTTTCAATCTCTTTTTCTCAGATGAAGCTGTTAATTTTCTTGAATCATTTCATACAAGATGCGGAGCCAAAGAGTTTAGGTGCACTTCATGGTATGAAGAGCAATTTGGATATGCACGTGATGTATCATTTCAGCATCCAATAAAACTGTATTTCGGTGCGCGATATGGTCACTGCCAGGGGATACAGAAAGTTAGAGTTTACCGAGACAGACATATGATTGTTGAGACATCACAAGAAATCAGCGATGTACCTTATGGGGATTATTTCCGTGTTCAGGGGCTTTGGGATGTGAAGAGCACTGGTGATGAAGGAAATAGTTATTGTATTTTGCATGTCTACATAAATGTGGCATTTTCTAAGAAAACTATGTGGAGAGGGAAAATAGAGCAGTCCACAGCAGATGAATGCCGAGATGCTTATTCAATTTGGATAAACAATGCACATGAATTGTTGAAGCAGAAGCACCTTACGAGACAAGAAGATCGGGCTGCTAATGGAGTTGAAACTGATGCTGCTCAAGTGGATAGGCACACTAAAATTGAAGAATCTTCAGAAGGGTTACATGATGCAAGGAATCATGCAGGGCACCCACAGTTGGCTTCTGATTCTATGGACAGTAATAGGCAATTTGGAAATCCATTGCAAGGAATTTTGAATGACACAACCTCCGTTTCATCTTTATCTAAAGAATTGTTGACAACACTATGTTCCTATTTGAGAAGTCGAAGCCACCTTCCTCTAATTTTGGTTATCACCTCAGTTTTGATACTGCTTTTGATGCAGCTTAGCATAGTTGTGCTATTAACTAGAGCCCCTCAAGTACATATTATTCCTCAAGTGGATTATATAAACTCTATTGGTAGTCGTGGCAATGGAGCGGAGGAAATAGCTTTGTTAGAGAAGCGGGTTCACCTCCTCAGCGATGAAATGGTTGTGGTTGGGACCCGATTAGAGAAGTTGCACCAGGAGTACCTAGAGTTGACAGCACGCCTACATGACCTTAAACAGTTCAAGAAACAAAGATGA 1944 41.56 MAVASPSKEKAEPSQSIESIPSSPLVSKSGSDSGSETSSLGVVDPSDRNEQSDSSVNHRKDVEIQSAASLRSEEYRQLFRLPPDEVLVQDFNCALQENILLQGHMYLFVHHICFYSNIFGFETKKIITFHEVTCVRKAKTAAIFPNAIEILAGGKKYFFASFLSRDEAYRLIVDGWAQHNDRVNAQIDCQESKSDNGSQDALVIFENSKSFKRQTNDLYSMDRNKDSRVLEECNRLSNGEDDISVSTRHSETLENGEEDLEPVANAETLLSRKPFIWKPEDANAPKIPECYTLVAESKFPIQLEEFFNLFFSDEAVNFLESFHTRCGAKEFRCTSWYEEQFGYARDVSFQHPIKLYFGARYGHCQGIQKVRVYRDRHMIVETSQEISDVPYGDYFRVQGLWDVKSTGDEGNSYCILHVYINVAFSKKTMWRGKIEQSTADECRDAYSIWINNAHELLKQKHLTRQEDRAANGVETDAAQVDRHTKIEESSEGLHDARNHAGHPQLASDSMDSNRQFGNPLQGILNDTTSVSSLSKELLTTLCSYLRSRSHLPLILVITSVLILLLMQLSIVVLLTRAPQVHIIPQVDYINSIGSRGNGAEEIALLEKRVHLLSDEMVVVGTRLEKLHQEYLELTARLHDLKQFKKQR 647
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g01039 647 ProSiteProfiles VASt domain profile. 290 461 IPR031968 -
Nenu6g01039 647 CDD PH-GRAM-GRAMDC 83 176 - -
Nenu6g01039 647 PANTHER PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC 9 641 - GO:0043069(PANTHER)
Nenu6g01039 647 MobiDBLite consensus disorder prediction 467 512 - -
Nenu6g01039 647 FunFam GRAM domain containing 1B 71 179 - -
Nenu6g01039 647 Pfam GRAM domain 75 180 IPR004182 -
Nenu6g01039 647 Coils Coil 623 643 - -
Nenu6g01039 647 Pfam VAD1 Analog of StAR-related lipid transfer domain 294 440 IPR031968 -
Nenu6g01039 647 MobiDBLite consensus disorder prediction 9 50 - -
Nenu6g01039 647 MobiDBLite consensus disorder prediction 478 498 - -
Nenu6g01039 647 SMART gram2001c 73 139 IPR004182 -
Nenu6g01039 647 Gene3D - 71 179 IPR011993 -
Nenu6g01039 647 MobiDBLite consensus disorder prediction 1 60 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g01039 K27900 vascular associated death 1, chloroplastic
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:15389814 Nenu6g01039 Nenu-Chr6:36265370 wgd