AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g01087 ATGGAGCAAGAACCATCTGGAACCCAAGCTCGTTCTACTAGGAAGGTCAGATATGCACCCAAAGCCCCTCCTCGCAGAACGCACAAACCCATTGAAACCAAAACTGAAGTTGTGGAGGACGCGGAAGCTGCCCAGTCCAGGGAGTTGCTTCGCCGTGTCAACGAAGCTTCGGCAAGACGAGGACCTAAAGTTGAAAAGAAACCGGTTCAAGTAGCATTTGGTTATGGAGGTGCATCACCTGCAATAAGAACATTTGGTGTTCCTAGGGGAGGGACTGGTAGCAGCAGCACCAGTAGAGTGGAACCTCAAGTTCATATTCCTGATGATAATACTAACGAGTCAGACCAGAAGAAGAAGAAAGAGTATGTTGAACCCTGGAATTACTATACTTACTACCCTGTTACCCTTCCCCTGAGGAGGCCATACTCAGGAAATCCAGAACTTCTTGATGAGGAGGAATTTGGGAAGGATTCATCAGACTTGCCATATGAAGAGAGCACTATAAAACCAGCTGTAGAGCTTGGACTGATGGAGGAAGGTGAAGAACAGAAAATGTTCTTCATTCAGCTACCTGATTCTCTGCCATTAGTTAAGCAGTCAGCTAGTGCAAAGGGGAAAGATATGGCTCGCAGCTCAAAACCATTGAAGAGTGTGGGTGCTGCAGATCAGGGCTGCAGTTTAGAAGAGTTGCCTCCTGGTTTCATGGGCAAAATGCTGGTGTACAAGAGTGGCGCTGTCAAGCTAAAGCTTGGAGAAACCCTTTATGATGTTTCCTCTGGATCAGACTGTATTTTTGCCCAGGATGTCGTAGCCATCAATACCGAAGACCGACACTGTTGCGTCATAGGAGAGCTCTACAAGCGTGCCATCATAACCCCTGATTTTGATTCCCTCTTATTGTAG 903 47.07 MEQEPSGTQARSTRKVRYAPKAPPRRTHKPIETKTEVVEDAEAAQSRELLRRVNEASARRGPKVEKKPVQVAFGYGGASPAIRTFGVPRGGTGSSSTSRVEPQVHIPDDNTNESDQKKKKEYVEPWNYYTYYPVTLPLRRPYSGNPELLDEEEFGKDSSDLPYEESTIKPAVELGLMEEGEEQKMFFIQLPDSLPLVKQSASAKGKDMARSSKPLKSVGAADQGCSLEELPPGFMGKMLVYKSGAVKLKLGETLYDVSSGSDCIFAQDVVAINTEDRHCCVIGELYKRAIITPDFDSLLL 300
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g01087 300 MobiDBLite consensus disorder prediction 89 105 - -
Nenu6g01087 300 PANTHER DNA-DIRECTED RNA POLYMERASE III 1 299 IPR007811 GO:0003677(InterPro)|GO:0005666(InterPro)|GO:0005666(PANTHER)|GO:0006383(InterPro)|GO:0042797(PANTHER)
Nenu6g01087 300 MobiDBLite consensus disorder prediction 25 46 - -
Nenu6g01087 300 MobiDBLite consensus disorder prediction 80 119 - -
Nenu6g01087 300 Pfam RNA polymerase III RPC4 182 295 IPR007811 GO:0003677(InterPro)|GO:0005666(InterPro)|GO:0006383(InterPro)
Nenu6g01087 300 MobiDBLite consensus disorder prediction 1 46 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g01087 K03026 DNA-directed RNA polymerase III subunit RPC4
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr6:2362480 Nenu6g01087 Nenu-Chr6:37352317 dispersed