AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g01113 ATGGATGGTTGCACTGTAGGAGATGAAGAAACAGTTTCAAAAAGAGACGAGGAAGAAATTTGTGCTTGTTCCAGTGGTCAAGCGCAGCATAGGCGCACTAAGAGTGCTTCAGACATGAACTTGGATGTCACAGGACATGGAGTTCCAAATTCCATGGGAAGAGACTTGGATGTATCACACTCTATCACCAGAATTTACAGGGCACGAAGTCCTCTCCATCAGAGTGCAAGTGATACTAAGACCAAAACCCCATCAAGCCATCAAGCTTCCTTGGTGAAAGATATTGAACAGCTACAACTGCGTTTGCAGCAAGAGAAGTCTATGCGAATTATGCTTGAGAGATCAATGGGCCGAGCTTCTAGTACATTATCTCCTGGACACAGGCACTTTGCTGCTCAGACAAAAGAGTTGATAGCTGAAATAGAGTTACTTGAAGAAGAGGTTGCAAACCGTGAACAGCATGTTCTATCTCTCTACAGAAGCATATTTGATCATTGTATTAGCGGTGCACCTTCTGGTCAAAGCTCAGGCATTACATCTCCTGCCCACCCAAAGAATGAAGTAAGAAAACACCCAAGCGTAATCTCAAGTGCATTTTGCTCCTCAACGAAAAAGTTTCCATTGCAACCTTTCCAAGTTCTGGCTTCTATAAAGGAATCCAGGAAAAAGAACGTGCTGTTGCATTCAAAGTCTAGACATGCTTCACTTCTGAATGGGAAAACTGACATTCATGTCAAGAACAATTATGCAGATCCCATTAAGGTTCATGAAAAGGTACCAGGTATGGAGAGAACAACTTTAACGCGTACCTTGAAGGACCATCTCTACCACTGCCCAAGCAAATTATCTGAGGATCTGGTCAGGTGTATGGCTGCAATATATTGCTGGATACAAAGCACGACATCTATGAAGCCAGAAAAGAACCATTCTCTTTTATTGTCCAGATCATCAACTAGTGTTGTCCTCCCTAGACGTGGTATTGTGGAGGACAGAGATTTGTCTTGCAAATCCATGGTAGAAATATCTTGGATATCAACTGATAAGAATCAATTCTCTCATGCATCTTATCCTATCAACAACTATAGGGTTCTAGTGGAACAACTGGAGAGGGTCAATGTGAATCAAATGGGAAGCAATGCCCAAATGGCATTTTGGATTAATGTGTACAATTCTCTTGTTATGCATGCATATTTAGCATATGGGATTTCACATGGTTCAATGAGAAGGATGGCCTTGTTTCACAAGGCTGCTTACAGCATTGGTGGCCATGTAATTAGTGCAGATGCCATAGAGCAATCTATTTTCAGTTTCCGTACCCCTCGAATTGGCAGGTGGTTTGAGACCATACTTTCAACTGCCATGAGGAAGAAATCTGGAGAAGAAAGGCAACTCCTCAGTTCAAGATTTGGCCTCCAATGTTCTCAACCACTCATCTGCTTTGCCCTTTGTACTGGAGCTTCTTCAGATCCTGTGTTAAAAGTCTACACTGCAAAAAATATCAAGGAGGAGCTAGAAATAGCCAAGAAGGAGTTTCTTCAAGCTAATGTAATGGTGAAGAAGTCAAGAAATGTCTTTCTACCCAAACTGCTAGATAGGTTCGCTAAAGAGGCCTCCATCACCTCAGATGATCTTCTCAAGTGGGTTTCCCTGAATGTTGATAAGAAGCTCCATGATTCCATTCGTAAATGCACTGATTGTAAAACAAAGAGGAAAACATCACAGATTGTAGAGTGGTTACCTTACAATACAAGGTTCCGTTACATCTTCTCAAAGGACTTAATGGAGAAACCATGGTGGGTATAA 1803 41.87 MDGCTVGDEETVSKRDEEEICACSSGQAQHRRTKSASDMNLDVTGHGVPNSMGRDLDVSHSITRIYRARSPLHQSASDTKTKTPSSHQASLVKDIEQLQLRLQQEKSMRIMLERSMGRASSTLSPGHRHFAAQTKELIAEIELLEEEVANREQHVLSLYRSIFDHCISGAPSGQSSGITSPAHPKNEVRKHPSVISSAFCSSTKKFPLQPFQVLASIKESRKKNVLLHSKSRHASLLNGKTDIHVKNNYADPIKVHEKVPGMERTTLTRTLKDHLYHCPSKLSEDLVRCMAAIYCWIQSTTSMKPEKNHSLLLSRSSTSVVLPRRGIVEDRDLSCKSMVEISWISTDKNQFSHASYPINNYRVLVEQLERVNVNQMGSNAQMAFWINVYNSLVMHAYLAYGISHGSMRRMALFHKAAYSIGGHVISADAIEQSIFSFRTPRIGRWFETILSTAMRKKSGEERQLLSSRFGLQCSQPLICFALCTGASSDPVLKVYTAKNIKEELEIAKKEFLQANVMVKKSRNVFLPKLLDRFAKEASITSDDLLKWVSLNVDKKLHDSIRKCTDCKTKRKTSQIVEWLPYNTRFRYIFSKDLMEKPWWV 600
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g01113 600 Coils Coil 497 517 - -
Nenu6g01113 600 MobiDBLite consensus disorder prediction 68 89 - -
Nenu6g01113 600 Coils Coil 95 115 - -
Nenu6g01113 600 Pfam Protein of unknown function, DUF547 374 512 IPR006869 -
Nenu6g01113 600 Coils Coil 127 154 - -
Nenu6g01113 600 PANTHER UNCHARACTERIZED 71 593 - -
Nenu6g01113 600 Pfam Leucine-zipper of ternary complex factor MIP1 86 164 IPR025757 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g01113 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:101650908 Nenu6g01113 Nenu-Chr6:37985807 dispersed
Nenu Nenu-Chr6:1047960 Nenu6g01113 Nenu-Chr6:37985807 dispersed
Nenu Nenu-Chr6:37985807 Nenu8g01975 Nenu-Chr8:56745418 dispersed
Nenu Nenu-Chr1:17914932 Nenu6g01113 Nenu-Chr6:37985807 wgd