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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g01155 ATGGCTTCGTTACTTGTTTGGAGGCGAGTTTCTGCTCCAAGCCTTCTCAACAAGTTCCTCCACCCCCCCCGATCTGTCGCCGTCGCTCCTTCTGCCGCTCGCTCCTTCAACACTAATGCTCAGTTGCGCGATCATGACGACGATGACCGTCTCATCGATGTCAGCCGCCGCTCCGACGAGCCTGTTTCCCGCCGTCGTGACTACGTTCCTAGCTTCTTTTCAGATGTGGTTGATCCCTTCTCTCCGACAAGGAGCTTGAGCCAGGTTCTGAATTTGATGGATCAATTCATGGACAACCCGTTCTTGTCTGCATCGAGTGGGATGGGAGCTGGATCGAGAAGAGGATGGGACGTTAAAGAAGACGAGAATGGTCTCTATGTGAGGATCGACATGCCAGGGCTCGGGAAAGATAATGTTAAGGTTTCCGTGGAGCAGAACACCCTGATCATCAAGGGAGAAGGGGAAAAGGAATCCGAGGAGGAGGAGAGCGGACGGAGGTACAGTAGCAGGATCGACCTACCTGCGAAGCTCTACAAGACCGATCAAATTAAAGCTGAGATGAAGAATGGTATACTTAAGGTTGTAGTTCCGAAGGTGAAGGAAGAGGAGAGGAAGGACGTTTTCCATGTCAACATCGAGTGA 642 51.71 MASLLVWRRVSAPSLLNKFLHPPRSVAVAPSAARSFNTNAQLRDHDDDDRLIDVSRRSDEPVSRRRDYVPSFFSDVVDPFSPTRSLSQVLNLMDQFMDNPFLSASSGMGAGSRRGWDVKEDENGLYVRIDMPGLGKDNVKVSVEQNTLIIKGEGEKESEEEESGRRYSSRIDLPAKLYKTDQIKAEMKNGILKVVVPKVKEEERKDVFHVNIE 213
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g01155 213 CDD ACD-sHsps-like 117 198 - -
Nenu6g01155 213 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 107 213 IPR002068 -
Nenu6g01155 213 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 23 204 IPR044656 -
Nenu6g01155 213 FunFam 23.6 kDa heat shock protein mitochondrial 67 212 - -
Nenu6g01155 213 SUPERFAMILY HSP20-like chaperones 83 205 IPR008978 -
Nenu6g01155 213 Pfam Hsp20-alpha crystallin family 117 212 IPR002068 -
Nenu6g01155 213 Gene3D - 72 212 IPR008978 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g01155 K13993 HSP20 family protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr4:15037235 Nenu6g01155 Nenu-Chr6:39252389 dispersed
Nenu Nenu-Chr6:39252389 Nenu8g00822 Nenu-Chr8:14909082 dispersed
Nenu Nenu-Chr1:130620821 Nenu6g01155 Nenu-Chr6:39252389 transposed
Nenu Nenu-Chr1:179009131 Nenu6g01155 Nenu-Chr6:39252389 transposed
Nenu Nenu-Chr1:179009603 Nenu6g01155 Nenu-Chr6:39252389 transposed
Nenu Nenu-Chr1:19459126 Nenu6g01155 Nenu-Chr6:39252389 wgd