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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g01165 ATGGCAAAAAGTTACTTCAAGCAAGAGCATGACCTTGAGAAGAGGCGTGCTGAGGCTGCTAGGATTAGGGAAAAATATCCAGACAGGATTCCGGTGATTGTGGAGAAGGCTGAAAGAAGTGACATACCAAACATTGATAAGAAAAAGTACCTGGTTCCTGCTGACTTGACGGTGGGACAATTTGTGTATGTAATCCGGAAGAGAATAAAATTGAGTGCAGAAAAGGCAATTTTCATTTTTGTAGATAACGTCCTCCCACCTACAGGTGCAATAATGTCGACAATATATGATGAAAAGAAGGATGAAGATGGATTTCTGTATGTTACTTACAGTGGGGAAAACACATTTGGGGACCAGAATCTGCTGTAG 369 41.19 MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFGDQNLL 122
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g01165 122 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED 4 117 IPR004241 GO:0006995(PANTHER)
Nenu6g01165 122 FunFam Autophagy-related protein 1 117 - -
Nenu6g01165 122 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Nenu6g01165 122 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Nenu6g01165 122 CDD Ubl-ATG8 12 114 - -
Nenu6g01165 122 Gene3D - 1 117 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g01165 K08341 GABA(A) receptor-associated protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:69818572 Nenu6g01165 Nenu-Chr6:39516005 dispersed
Nenu Nenu-Chr1:139568172 Nenu6g01165 Nenu-Chr6:39516005 dispersed
Nenu Nenu-Chr3:1556483 Nenu6g01165 Nenu-Chr6:39516005 dispersed
Nenu Nenu-Chr1:19721574 Nenu6g01165 Nenu-Chr6:39516005 wgd