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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g01189 ATGTCGGCTTGCAAGATCGAAGATCCTCGTATCCATGGCATCAAAACTAGAATCCGGGTCGTTCCCGATTTCCCGAAGCCAGGGATTATGTTCCAAGACATTACGACTCTGCTACTCGATCCAAAGGCATTTAAGGACACGGTAGATTTGTTCGTTGAGAGATATAAAGGCAAAGATATATCGGTAGTCGCAGGGATTGAAGCTCGGGGTTTTATATTTGGTCCTCCCATTGCATTGGCAATTGGAGCAAAGTTTGTTCCATTGAGAAAACCAAGAAAGTTGCCAGGTAAAGTTATTTCGGAGGAGTATGTGTTGGAATATGGAACAGATTGTCTTGAAATGCACGTTGGAGCAGTTGATCCTGGTGATCGTGCTTTGGTAGTTGATGATTTGATAGCAACTGGTGGTACACTTTGTGCAGCAATGAAATTACTTGAACGTGTTGGGGCTGAAGTGGTTGAATGCGCATGTGTAATTGAACTACCTGATCTAAAGGGTCGCGAGCGTTTGAATGGCAAGCCATTATACATACTGGTGGAATCACACTGA 549 43.9 MSACKIEDPRIHGIKTRIRVVPDFPKPGIMFQDITTLLLDPKAFKDTVDLFVERYKGKDISVVAGIEARGFIFGPPIALAIGAKFVPLRKPRKLPGKVISEEYVLEYGTDCLEMHVGAVDPGDRALVVDDLIATGGTLCAAMKLLERVGAEVVECACVIELPDLKGRERLNGKPLYILVESH 182
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g01189 182 Gene3D - 2 182 IPR029057 -
Nenu6g01189 182 SUPERFAMILY PRTase-like 10 174 IPR029057 -
Nenu6g01189 182 NCBIfam adenine phosphoribosyltransferase 14 180 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Nenu6g01189 182 Pfam Phosphoribosyl transferase domain 53 163 IPR000836 -
Nenu6g01189 182 CDD PRTases-typeI 48 180 IPR000836 -
Nenu6g01189 182 FunFam Adenine phosphoribosyltransferase 1 2 181 - -
Nenu6g01189 182 Hamap Adenine phosphoribosyltransferase [apt]. 14 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Nenu6g01189 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 6 181 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g01189 K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr2:26859141 Nenu6g01189 Nenu-Chr6:39808031 dispersed
Nenu Nenu-Chr5:74086588 Nenu6g01189 Nenu-Chr6:39808031 dispersed
Nenu Nenu-Chr6:39808031 Nenu8g00868 Nenu-Chr8:15768084 dispersed
Nenu Nenu-Chr1:20118936 Nenu6g01189 Nenu-Chr6:39808031 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nenu1g00243 . 71 540 PRT gene family AT2G16570 85.35 0.0 832.0
Nenu1g00724 . 1 181 PRT gene family AT4G22570 83.978 4.18e-105 297.0
Nenu1g01354 . 31 244 PRT gene family AT3G27440 25.431 8.32e-18 83.2
Nenu1g01846 . 30 141 PRT gene family AT3G27440 29.323 1.68e-06 46.6
Nenu1g05326 . 1 466 PRT gene family AT1G55810 85.563 0.0 830.0
Nenu2g01293 . 1 187 PRT gene family AT5G11160 81.818 1.04e-109 310.0
Nenu2g01359 . 151 273 PRT gene family AT2G16570 27.941 2.65e-07 52.0
Nenu2g02313 . 1 225 PRT gene family AT3G53900 77.333 8.46e-131 369.0
Nenu2g03043 . 186 289 PRT gene family AT2G16570 37.736 1.44e-08 55.8
Nenu3g01712 . 84 566 PRT gene family AT2G16570 83.851 0.0 832.0
Nenu3g01773 . 31 244 PRT gene family AT3G27440 25.431 6.33e-18 83.6
Nenu3g02983 . 115 242 PRT gene family AT5G40870 30.469 9.97e-13 68.6
Nenu3g03690 . 31 465 PRT gene family AT1G55810 76.552 0.0 719.0
Nenu3g03833 . 1 483 PRT gene family AT5G40870 85.093 0.0 827.0
Nenu4g01669 . 49 210 PRT gene family AT4G26510 22.222 3.13e-08 55.5
Nenu4g02093 . 64 242 PRT gene family AT5G40870 27.374 6.54e-18 85.5
Nenu5g01451 . 3 187 PRT gene family AT1G71750 65.405 1.92e-87 253.0
Nenu5g02710 . 61 241 PRT gene family AT1G27450 83.978 3.81e-110 312.0
Nenu6g01189 . 8 181 PRT gene family AT4G22570 85.632 1.46e-106 301.0
Nenu8g00868 . 1 187 PRT gene family AT5G11160 81.283 3.21e-109 308.0