AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nenu6g01195 | ATGGATTTGAAATCAAACCATGCAGCTCCTGTTCTCACTGAACCCATACCCATAAGCAAGTCAAGATTAGGCATCCATACAAATCTGTTGCCATACTCCCCACCAGGAGGTTTGTTCTTAACAATTCCAAGAAAGAAGCCCATGCCAGGAAAGCTTGATGATGTCCGCATCAGCAGTTGGCTGGATGCCATGGAAGCCTCCTCACCTCCTCGCAAGAAGCCAACTAAGGATTTCAACATTGAGGTTGCATCTGATGATACTGACGCTTCTTACCGCTCCTGGATGCTGAAGTATCCATCAGCACTTACATCTTTTGATGAAATCACAAATTATGCAAAGGACAAGAGGATAGCATTGTTTCTGGACTATGATGGGACCCTTTCACCAATTGTAGATGACCCTGACCGTGCTTTTATGTCTAACGCTATGCGTTCTGCTGTGAGAAATGTTGCCAAATATTTCCCAACAGCAATAATTAGTGGAAGGAGGCGTGATATGGTATACGAATTTGTAGGATTGACAGAACTCTACTATGCTGGTAGTCATGGGATGGACATCATGGGCCCGGTCAGACATTCGGTGTCTGCTGATGACCATCCAAATTGTATTAGGTCTACTGACAAGCAGGGTAAGGAGGTAAATCTGTTCCAACCTGCTAGTGAGTTTTTACCTATGATTGATGAGGTTTTTAGAACCCTTGTCGAGAATACAAAAGGAATTAAAGGTGCAAAAGTTGAGAATCACAAGTTTTGTACCTCTGTACATTACCGTAATGTAGATGAAAAGAATTGGCCTATAGTTGCACAATGTGTTCATGGTGTGCTGAAAAATTACCCACGTCTACGATTAACTCATGGGCGGAAGGTTTTAGAGGTCCGTCCTGTGATTGACTGGGATAAAGGGAAAGCCGTTGAGTTTCTTCTTGAGTCGCTCGGACTAGGTGATTCTGCTGATGTTGTCCCAATATATGTTGGAGACGACCGTACAGATGAAGATGCATTTAAGGTCCTTCGTGAGGGTAATCGCGGTTTTGGAATTTTAGTATCTTCAGTGCCAAAAGATAGCAGTGCATTCTACTCTCTGAGGGATCCATCAGAGGTCATGGAATTTCTCAAGTCCCTGGTGAGATGGAAGAAATTGAGTAAACTATAA | 1152 | 43.23 | MDLKSNHAAPVLTEPIPISKSRLGIHTNLLPYSPPGGLFLTIPRKKPMPGKLDDVRISSWLDAMEASSPPRKKPTKDFNIEVASDDTDASYRSWMLKYPSALTSFDEITNYAKDKRIALFLDYDGTLSPIVDDPDRAFMSNAMRSAVRNVAKYFPTAIISGRRRDMVYEFVGLTELYYAGSHGMDIMGPVRHSVSADDHPNCIRSTDKQGKEVNLFQPASEFLPMIDEVFRTLVENTKGIKGAKVENHKFCTSVHYRNVDEKNWPIVAQCVHGVLKNYPRLRLTHGRKVLEVRPVIDWDKGKAVEFLLESLGLGDSADVVPIYVGDDRTDEDAFKVLREGNRGFGILVSSVPKDSSAFYSLRDPSEVMEFLKSLVRWKKLSKL | 383 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nenu6g01195 | 383 | PANTHER | TREHALOSE 6-PHOSPHATE PHOSPHATASE | 40 | 381 | IPR044651 | GO:0004805(InterPro)|GO:0004805(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro) | |
| Nenu6g01195 | 383 | FunFam | Trehalose 6-phosphate phosphatase | 259 | 383 | - | - | |
| Nenu6g01195 | 383 | FunFam | Trehalose 6-phosphate phosphatase RA3 | 117 | 258 | - | - | |
| Nenu6g01195 | 383 | NCBIfam | trehalose-phosphatase | 115 | 376 | IPR003337 | GO:0005992(InterPro) | |
| Nenu6g01195 | 383 | Gene3D | - | 228 | 382 | IPR023214 | - | |
| Nenu6g01195 | 383 | Gene3D | - | 117 | 209 | IPR023214 | - | |
| Nenu6g01195 | 383 | SUPERFAMILY | HAD-like | 118 | 378 | IPR036412 | - | |
| Nenu6g01195 | 383 | CDD | HAD-TPP | 118 | 369 | - | - | |
| Nenu6g01195 | 383 | Pfam | Trehalose-phosphatase | 120 | 365 | IPR003337 | GO:0005992(InterPro) | |
| Nenu6g01195 | 383 | NCBIfam | HAD-IIB family hydrolase | 119 | 338 | IPR006379 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nenu6g01195 | K01087 | trehalose 6-phosphate phosphatase [EC:3.1.3.12] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nenu | Nenu-Chr1:36968569 | Nenu6g01195 | Nenu-Chr6:39999530 | dispersed | |
| Nenu | Nenu-Chr1:105389371 | Nenu6g01195 | Nenu-Chr6:39999530 | dispersed | |
| Nenu | Nenu-Chr5:52575771 | Nenu6g01195 | Nenu-Chr6:39999530 | dispersed | |
| Nenu | Nenu-Chr1:20364663 | Nenu6g01195 | Nenu-Chr6:39999530 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Nenu1g00123 | . | 69 | 626 | Trehalose Biosynthesis gene family | AT4G24040 | 59.643 | 0.0 | 671.0 | |
| Nenu1g00237 | . | 1 | 849 | Trehalose Biosynthesis gene family | AT4G17770 | 79.113 | 0.0 | 1431.0 | |
| Nenu1g00728 | . | 581 | 834 | Trehalose Biosynthesis gene family | AT1G70290 | 26.596 | 5.86e-13 | 68.9 | |
| Nenu1g03160 | . | 1 | 93 | Trehalose Biosynthesis gene family | AT1G68020 | 51.515 | 3.22e-27 | 101.0 | |
| Nenu1g03800 | . | 583 | 834 | Trehalose Biosynthesis gene family | AT1G70290 | 26.007 | 3.94e-08 | 53.5 | |
| Nenu2g01633 | . | 1 | 864 | Trehalose Biosynthesis gene family | AT1G23870 | 66.437 | 0.0 | 1242.0 | |
| Nenu3g00691 | . | 1 | 844 | Trehalose Biosynthesis gene family | AT1G06410 | 77.123 | 0.0 | 1385.0 | |
| Nenu3g00775 | . | 1 | 941 | Trehalose Biosynthesis gene family | AT1G78580 | 77.673 | 0.0 | 1498.0 | |
| Nenu3g01013 | . | 577 | 766 | Trehalose Biosynthesis gene family | AT4G17770 | 57.895 | 3.61e-72 | 234.0 | |
| Nenu3g01718 | . | 1 | 843 | Trehalose Biosynthesis gene family | AT4G17770 | 79.339 | 0.0 | 1436.0 | |
| Nenu3g02468 | . | 1 | 843 | Trehalose Biosynthesis gene family | AT4G17770 | 73.672 | 0.0 | 1318.0 | |
| Nenu3g03512 | . | 1 | 865 | Trehalose Biosynthesis gene family | AT1G23870 | 72.633 | 0.0 | 1333.0 | |
| Nenu4g01490 | . | 1 | 843 | Trehalose Biosynthesis gene family | AT4G17770 | 74.026 | 0.0 | 1335.0 | |
| Nenu4g02470 | . | 1 | 867 | Trehalose Biosynthesis gene family | AT1G23870 | 71.396 | 0.0 | 1317.0 | |
| Nenu5g01590 | . | 582 | 846 | Trehalose Biosynthesis gene family | AT1G06410 | 27.018 | 1.39e-08 | 55.1 | |
| Nenu6g01195 | . | 581 | 834 | Trehalose Biosynthesis gene family | AT1G70290 | 28.671 | 7.80e-13 | 68.2 | |
| Nenu6g01467 | . | 1 | 940 | Trehalose Biosynthesis gene family | AT1G78580 | 76.761 | 0.0 | 1473.0 | |
| Nenu7g00693 | . | 278 | 360 | Trehalose Biosynthesis gene family | AT4G24040 | 57.831 | 9.62e-23 | 97.8 | |
| Nenu8g01181 | . | 754 | 836 | Trehalose Biosynthesis gene family | AT4G17770 | 40.964 | 3.28e-19 | 79.7 | |
| Nenu8g01390 | . | 1 | 864 | Trehalose Biosynthesis gene family | AT1G23870 | 66.246 | 0.0 | 1236.0 |