AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g01203 ATGCCAGAGATGGAAGGTCCAGCAAAGGCTCCCCCCCAAATCTCCGAAATGTTTCAGAAGTTCGCCTTGGCCTTCAAGACCAAAACCATCGAATTCTTCGCGGACGAAGAAGACGACGATGCCGATCCCCTCTCCCTTCTCGACTCCACTGAAGAAGTCATCACCGGTCAGCGCGTCGTCGTCATCAAGCCCGATCAACTCATTAAGCCAACCCCACCTGCCCAACTGCAGCAGCAGCAGCAGTATCACCAACACCAGCAATTACCATCACCACCACCTCAACAACAACAACCACAACAACAAAATGAGAGAGATCGTTACCACCCCGACAATCTCCAAATCGTCCAAACCCTAATCTCTTCCCTCTTCGCCACCATTTCCTCCTTCGAAGCTTCTTATTTGCAATTTCAGACTGCTCATGCCCCTTTCGATGCCGACAATATAAAGACGGCTGATCGAGCTTTGGTCTCGCACCTTCAGAGACTATCCGAGTTGAAACAATCTTATAGGGATTTTCGCAAGAACCCTACCCCTAACCCCAATTTCCCTATCGCTTTGTCTGATTTGGAAGCTCAGGTACAGGAGAATCAGAGTCTGCTCCGTACTTTGGAGATAGTCGTCAACACGTTACAGTCCGATATCGATCTCAAAGATGCTGAGGTTTCCACAATGAAGCAAAAGTTGGAGAAAATTCAAAATTCCAATCTCAGGTTATCCAAGAGGCTGTGTAATTCGAATTCTACTTCGTCATTGAATTCTTATTCTTCTTCATCTTCTTCATCGTCCGCGTCCTCGTCTGTTTCTTCTTCTTCTTCTTCTTCTGAGGTTCTATTGTCTGTCGGAGTTTTCAGTTCGGTTTTACAGGACGCTTGCAGATCGGTGCATAGTTTTACTAAGCTCTTGATCTCTTTGATGAAGAAAGCCGGGTGGGATTTGGATTTGGCTGCGAACTCCGTTCAACCGGGTATCGACTACGTGAAGAGGGGGCATAATCGGTATGCGTTTCTCTCGTACGTTTGTTTAGTAATGTTTGAAGGCTTCGATTTAGAGGGTTTTGGCTTGGGAGGAGATGAAATCGAGTATAATGGAGTTGATTTGAGTATTCGGAGGAAAAATTCTTTGAGGCAATTTGTCGAGCACGGTACAGGTAACGAGATGGAGCTTCTAAATAGGGACCCAAGTGGTGATTTCGCCAGGTTTTGTGAGAACAAGTACGAGCAGCTAATTCACCCTACCATGGAGTCCTCTCTGTTCAAAACCTTGGACCAGAACGAACTTGTGTTGAGTTCTTGGAGGGCTTCCGCTGCTTTCCACGAGTTGTTTGTAAACATGGCTAGTTCCATTTGGATGCTGCATAAGTTGGCATTCTCGTTCGATCCACCGGTTGAGATTTTTCAGGTGGAGAGAGGGGTTGATTTCTCGATGGTTTACATGGAAAACGTCACGCGGGAAGGTGTGACACGAGACCAAACAAGAGCGAAGGTTGGTTTCACAGTTATTCCAGGATTTAGAATTGGGAGGACCGTCATTCAATCTCAGGTGTATCTAATTGGCACCAAGCGTGCAGATTGA 1572 46.5 MPEMEGPAKAPPQISEMFQKFALAFKTKTIEFFADEEDDDADPLSLLDSTEEVITGQRVVVIKPDQLIKPTPPAQLQQQQQYHQHQQLPSPPPQQQQPQQQNERDRYHPDNLQIVQTLISSLFATISSFEASYLQFQTAHAPFDADNIKTADRALVSHLQRLSELKQSYRDFRKNPTPNPNFPIALSDLEAQVQENQSLLRTLEIVVNTLQSDIDLKDAEVSTMKQKLEKIQNSNLRLSKRLCNSNSTSSLNSYSSSSSSSSASSSVSSSSSSSEVLLSVGVFSSVLQDACRSVHSFTKLLISLMKKAGWDLDLAANSVQPGIDYVKRGHNRYAFLSYVCLVMFEGFDLEGFGLGGDEIEYNGVDLSIRRKNSLRQFVEHGTGNEMELLNRDPSGDFARFCENKYEQLIHPTMESSLFKTLDQNELVLSSWRASAAFHELFVNMASSIWMLHKLAFSFDPPVEIFQVERGVDFSMVYMENVTREGVTRDQTRAKVGFTVIPGFRIGRTVIQSQVYLIGTKRAD 523
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g01203 523 Coils Coil 221 241 - -
Nenu6g01203 523 MobiDBLite consensus disorder prediction 72 90 - -
Nenu6g01203 523 MobiDBLite consensus disorder prediction 72 105 - -
Nenu6g01203 523 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 15 516 IPR040225 GO:0009639(InterPro)|GO:0009959(InterPro)
Nenu6g01203 523 MobiDBLite consensus disorder prediction 250 270 - -
Nenu6g01203 523 Pfam Plant protein of unknown function (DUF641) 113 241 IPR006943 -
Nenu6g01203 523 Coils Coil 186 206 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g01203 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr3:16916133 Nenu6g01203 Nenu-Chr6:40190763 dispersed
Nenu Nenu-Chr6:40190763 Nenu6g01518 Nenu-Chr6:47603383 dispersed
Nenu Nenu-Chr1:20523238 Nenu6g01203 Nenu-Chr6:40190763 wgd