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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g01204 ATGTCCTCGTCCTCTGCTTTTTCACTGGACCACCTATCTCCCTCCGAGCAGCTCTGCTACGTCCATTGCAACTTTTGCGACACTGTCCTCGCGGTGAGCGTCCCGTGCAGCAGTTTGTTCAAGACGGTTACGGTTCGATGTGGGCATTGCACCAACCTCCTCTCTGTTAACATGCGCGGGCTGCTTCTACCTGCAGCTAATCAGCTTCACCTTGGCAATACCTTCTTCTCTCCTTCCCGCAACTTTCTGGAAGAGATCCCAAGCCCACAGCCCAACTTGTTGATCGATCAGCCTAACCCAACTGACTCAATTGTTTCAGTCCGAGGAGGAAGCGATGAGCTCCCCAGACCCCCTGTTGTTAACAGACCTCCGGAGAAGAGACAGAGAGTCCCGTCTGCGTACAACCGATTCATCAAGGACGAGATCCAACGCATCAAGGCAGGAAATCCCGATATAACCCATAGGGAGGCTTTCAGTGCCGCTGCAAAGAACTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAAACCGTGAAGAAACCTAATGTGCGCCAACAGGAAGGAGAAGACGTTCTTATGAAAGATGGTTTCTTCGCTTCCGCCAACGTGGGCGTGTCTCCTTACTAA 636 52.52 MSSSSAFSLDHLSPSEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGNTFFSPSRNFLEEIPSPQPNLLIDQPNPTDSIVSVRGGSDELPRPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKPNVRQQEGEDVLMKDGFFASANVGVSPY 211
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g01204 211 PANTHER PROTEIN YABBY 6-RELATED 14 183 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Nenu6g01204 211 Gene3D High mobility group box domain 119 184 IPR036910 -
Nenu6g01204 211 Pfam YABBY protein 14 175 IPR006780 GO:0007275(InterPro)
Nenu6g01204 211 FunFam Axial regulator YABBY 120 191 - -
Nenu6g01204 211 CDD HMG-box-SF 129 165 - -
Nenu6g01204 211 MobiDBLite consensus disorder prediction 90 127 - -
Nenu6g01204 211 SUPERFAMILY HMG-box 119 168 IPR036910 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g01204 K25796 plant-specific transcription factor YABBY family protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr2:25941402 Nenu6g01204 Nenu-Chr6:40211840 dispersed
Nenu Nenu-Chr2:66354543 Nenu6g01204 Nenu-Chr6:40211840 dispersed
Nenu Nenu-Chr3:89760853 Nenu6g01204 Nenu-Chr6:40211840 dispersed
Nenu Nenu-Chr6:40211840 Nenu8g00836 Nenu-Chr8:15147585 dispersed
Nenu Nenu-Chr4:77340502 Nenu6g01204 Nenu-Chr6:40211840 transposed
Nenu Nenu-Chr1:20543824 Nenu6g01204 Nenu-Chr6:40211840 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nenu1g00735 . 15 229 C2C2-YABBY Transcription Factor family AT2G45190 64.516 9.08e-88 256.0
Nenu2g01261 . 8 163 C2C2-YABBY Transcription Factor family AT2G26580 79.375 7.72e-89 256.0
Nenu2g02961 . 1 184 C2C2-YABBY Transcription Factor family AT1G08465 61.702 1.94e-78 230.0
Nenu4g02569 . 7 189 C2C2-YABBY Transcription Factor family AT1G23420 58.47 5.51e-61 187.0
Nenu6g01204 . 15 229 C2C2-YABBY Transcription Factor family AT2G45190 64.815 9.87e-89 259.0
Nenu6g01635 . 1 184 C2C2-YABBY Transcription Factor family AT1G08465 63.298 1.02e-80 236.0
Nenu8g00836 . 6 163 C2C2-YABBY Transcription Factor family AT2G26580 75.309 5.27e-86 248.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Nenu YABBY 1.5e-72 CL0114 TF C2C2-YABBY