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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu6g01206 ATGCAAATGACGGATCCAAGTCTGGAGTTGCAGGAGGCCGGCTGGGAGGAATTGAGAAAAGAGGCCAGAAAGATTGAGGGCGATCTTGACGTCAAGCTCTCTTCCTACGCCAAGCTCGGTGCAAGGTTTACCCAGGGAGATACAGGATCACCTACTCTTGGGTCCAGCAGATCATGGAAGTCTATGGAAATGGAGATTCAGTCTTTGCTTGAAAAGCTACTAGATACAAATGATGCCATGAGCCGTTGTGCTGCATCTGCAGCACCTACTACTTCGGTAACACAGAAGCTAGCAAGGCACAGGGATATACTTCATGAGTTTTCTCAGGAATTTAGACGAATCAAAGGAAATATAAACTCCATGAGGGAGCATGCTGAACTTCTAAGTTCTGTGAGGGATGATATTAGTGAACACAAGGTATCTGGGAGTATGTCACCTAGAATGCATTTATTACGAGAGAGAGCTGCTATACATGGAAATATTGCTCATATTGATGAAGTGATAAATCAAGCTCAAGCTACGAGGTCAGTTTTGAGCTCCCAACGAACCTTATTTGGAGATGTTCAAGGGAAAGTCAAGCAACTAAGTGACAAGTTTCCTATCATCCGTGGCCTTCTTGGTGCCATCAAGAAGAAGCGATCAAGAGACACTCTTATTCTCTCAGCTGTCATCGCTGCTTGCACGTTATTCCTGATTATCTATTGGCTTTCAAAATAA 717 44.07 MQMTDPSLELQEAGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGDTGSPTLGSSRSWKSMEMEIQSLLEKLLDTNDAMSRCAASAAPTTSVTQKLARHRDILHEFSQEFRRIKGNINSMREHAELLSSVRDDISEHKVSGSMSPRMHLLRERAAIHGNIAHIDEVINQAQATRSVLSSQRTLFGDVQGKVKQLSDKFPIIRGLLGAIKKKRSRDTLILSAVIAACTLFLIIYWLSK 238
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu6g01206 238 PIRSF Golgi-SNARE 1 237 IPR023601 GO:0000139(InterPro)|GO:0005801(InterPro)|GO:0006888(InterPro)|GO:0016020(InterPro)
Nenu6g01206 238 PANTHER GOS-28 SNARE- RELATED 11 238 IPR023601 GO:0000139(InterPro)|GO:0000139(PANTHER)|GO:0005484(PANTHER)|GO:0005797(PANTHER)|GO:0005801(InterPro)|GO:0006888(InterPro)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0016020(InterPro)|GO:0031201(PANTHER)
Nenu6g01206 238 Pfam Snare region anchored in the vesicle membrane C-terminus 149 213 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu6g01206 K08495 golgi SNAP receptor complex member 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr2:29936003 Nenu6g01206 Nenu-Chr6:40247029 dispersed
Nenu Nenu-Chr4:5354914 Nenu6g01206 Nenu-Chr6:40247029 dispersed
Nenu Nenu-Chr6:40247029 Nenu8g01041 Nenu-Chr8:19896149 dispersed
Nenu Nenu-Chr1:20581474 Nenu6g01206 Nenu-Chr6:40247029 wgd