AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu7g00856 ATGGAAGTGAAAACCAAGAGAAGAGCTGTTGCTGAGAGTGCAGATACTGGAGAAGGCTTGGTTCTTCTCACTTCAATTGGGAATGGAGAGGATTTGGGTCCTATTGTCAGGCATGCTTTTGAAATGGGGAAGCCAGAGTCTCTCTTGCATCAACTCAAGAGTGTTGTAAAGAAAAAGGAAGTTGAAATTGAGGAGCTATGCAGGCTCCACTATGAGGAATTCATCCTTGCTGTTGATGAGCTCCGGGGTGTCTTGGTCGATGCCGAAGAGTTGAAGGGTGAACTTTCAAGTGACAACTTTCGGCTACAGGAGATTGGGAGCTCTTTGCTTTTGAAACTTGAGGAGCTCCTTGAGTCATACTCAATCAAGAAGAATGTCACTGAAGCTATAATGATGTCAAAGAACTGTGTTGAAATCCTATACCTCTGTGTGAAGTGCAATGAGCATGTAAGTGAAGGTCGGTTCTATCCTGCTATTAAGACTCTTGACAAAATAGAGAAAGATTTCTTGCAAGATGTTCATGCAAAGACCTTGAGAAGGGTGATTGAGAAGAGAATACCAGCAATAAAATCACATATTCAGAAGAAGGTATGTACTGAGTTCAATGAGTGGTTGGTTCATATAAGGAGCAAAGCTAGGGAAATTGGACAAACAGCCATAGGACAGACTGCATCAGCTCGTCAAAGGGAAGAAGAGATGAGGGCTCGTCAGAGGGAAGCTGAGGAGCAAAGCCGTGCAGGGTTAGGTGACTGTGTATATATGCTAGATGTTGAGGAGATAGATGAAGAGTTAATTCTCAAGTTTGATCTTACTCCTGTCTATAAGGCATTCCACATTCATCGTTGTCTTGGGATCCAAGACCAATTTCGAGACTATTACTATAACAATCGGATGATGCAACTCAATCTGGACTTACAGATATCATCAGCACAACCATTTCTTGAATCCCATCAAACATTCCTAGCTCAAATTGCAGGGCACTTCATAGTGGAGGACCGTGTCCTACGTACTGCTGTAGGGCTATTGTCCTCTAATCAGGTGGAGACCATATGGGAAGCGGCTATTTCTAAGATCACATCACTACTGCAGGAACAATTTTCTCGTATAGATACAGCAAGCCATCTGCTTCTGATCAAGCACTATGTGACTCTTGTGGGAGTGACTCTGAAACACTATGGCTACCAAGTTAGTCCCTTACTAGAGGTTCTTGACAACAGTAGGGACAAATATCATGAGCTTCTGTTAGAGGAGTGTGAGCGCCAAATGGTTGATGTTCTTGCAAATGATACTTATGAGCAGATGGTAATGAAGAAAGAATACGAGTACAACAAGAATGTTTTGGCATTTCATCTCCAAACCTCAGATATAATGCCAGCTTTCCCTTACATTGCACCCTTCTCGTCCACTGTTCCTGATGCTTGTCGCATTGTTCGATCATTCATTGAGGATTCTGTGAGTTACTTATCTTATGGGGGCCGCATGAATTTCTATGATGTTGTGAAGAAATACCTTGACAAGCTGTTAATAGATGTGTTGAATGAAGCTCTGTTGAGAACCATCTACAGTGGTACAACTGGTGTTTCCCAAGCAATGCAGATTGCTGCCAACATAGCTGTTCTTGAGAGGGCTTGTGATCTCTTTGTGCAGCAGGCAGCTCAACATTGTGGGGTCCCTGTTCGAACAATTGAGAGGCACCATTCTAGTTTAAATGCCAAGGTGGTTCTGAAGACATCAAGAGATGCAGCTTATCATGCTCTGTTGAACCTTGTTAACTCTAAATTAGATGAGTTCATGGCACTAGAGAGTATCAATTGGACGACAGAGGAGGTTCCACAGAACCCAAATGACTATGTAAATGAAGTGGTGATATACCTCGACACTGTCTTGTCCACAGCTCAGCAAATCTTGCCTTTGGATGCCTTATTCAAGGTTGGCACTGGGGCACTTGAGCACATCTCCAACTCAATCGTCACAGCTTTTCTATGTGACAGTGTGAAGAGGTTCAATGCAAATGCCGTCATGGGCATTGATATTGACCTGAAGGTGTTTGAGAATTTTGTAGATGACAGGTTCTATACCACTGGACTGATTGAGATGACCAAGGAAACTAGGCTAAGAGATTTCTTGATAGAATCTCGACAACTGGTTAACCTTTTATTAAGCAACCAGCCAGAGAATTTCATGAATCCAGTGATAAGGGAGAAATACTACAATGCACTAGACTATAAAAAGGTTGCTACCATTTGTGAGAAGTTTAAAGATTCTCCTGATAGGTTGTTTGGAAGCCTTTCAAATCGAAACCCAAAGCAAAATGCTCGAAGGAAGTCTATGGACATGCTAAAGAAAAGATTGAAGGATTTCAATTGA 2367 42.29 MEVKTKRRAVAESADTGEGLVLLTSIGNGEDLGPIVRHAFEMGKPESLLHQLKSVVKKKEVEIEELCRLHYEEFILAVDELRGVLVDAEELKGELSSDNFRLQEIGSSLLLKLEELLESYSIKKNVTEAIMMSKNCVEILYLCVKCNEHVSEGRFYPAIKTLDKIEKDFLQDVHAKTLRRVIEKRIPAIKSHIQKKVCTEFNEWLVHIRSKAREIGQTAIGQTASARQREEEMRARQREAEEQSRAGLGDCVYMLDVEEIDEELILKFDLTPVYKAFHIHRCLGIQDQFRDYYYNNRMMQLNLDLQISSAQPFLESHQTFLAQIAGHFIVEDRVLRTAVGLLSSNQVETIWEAAISKITSLLQEQFSRIDTASHLLLIKHYVTLVGVTLKHYGYQVSPLLEVLDNSRDKYHELLLEECERQMVDVLANDTYEQMVMKKEYEYNKNVLAFHLQTSDIMPAFPYIAPFSSTVPDACRIVRSFIEDSVSYLSYGGRMNFYDVVKKYLDKLLIDVLNEALLRTIYSGTTGVSQAMQIAANIAVLERACDLFVQQAAQHCGVPVRTIERHHSSLNAKVVLKTSRDAAYHALLNLVNSKLDEFMALESINWTTEEVPQNPNDYVNEVVIYLDTVLSTAQQILPLDALFKVGTGALEHISNSIVTAFLCDSVKRFNANAVMGIDIDLKVFENFVDDRFYTTGLIEMTKETRLRDFLIESRQLVNLLLSNQPENFMNPVIREKYYNALDYKKVATICEKFKDSPDRLFGSLSNRNPKQNARRKSMDMLKKRLKDFN 788
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu7g00856 788 MobiDBLite consensus disorder prediction 219 242 - -
Nenu7g00856 788 Coils Coil 223 243 - -
Nenu7g00856 788 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 578 727 IPR042044 -
Nenu7g00856 788 Gene3D - 395 569 IPR042045 -
Nenu7g00856 788 FunFam Exocyst complex component 396 564 - -
Nenu7g00856 788 FunFam Exocyst complex component 578 727 - -
Nenu7g00856 788 PIRSF Sec15 1 788 IPR007225 GO:0006886(InterPro)|GO:0090522(InterPro)
Nenu7g00856 788 MobiDBLite consensus disorder prediction 227 242 - -
Nenu7g00856 788 Pfam Exocyst complex subunit Sec15 C-terminal 398 751 IPR046361 -
Nenu7g00856 788 Coils Coil 49 69 - -
Nenu7g00856 788 PANTHER SEC15 14 787 IPR007225 GO:0000145(PANTHER)|GO:0006886(InterPro)|GO:0006887(PANTHER)|GO:0006893(PANTHER)|GO:0016020(PANTHER)|GO:0090522(InterPro)
Nenu7g00856 788 Pfam Exocyst complex component EXOC6-Sec15, N-terminal 51 220 IPR048359 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu7g00856 K19985 exocyst complex component 6
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr4:16056556 Nenu7g00856 Nenu-Chr7:17946915 transposed
Nenu Nenu-Chr5:61583755 Nenu7g00856 Nenu-Chr7:17946915 transposed
Nenu Nenu-Chr2:80640862 Nenu7g00856 Nenu-Chr7:17946915 wgd