AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nenu7g00908 | ATGGGTGGTAGAGCTGTGGTGTCCGACGATGAAGAGGAGGTCGAAGAGGAGGAGGACGAGAGGGAAGTTGGGGATGTGGAAGCAGTCGATGACGAAGAGAGGGGCGACGTTGACGAAGATGACGAGGAAGAAGACGAAGAGGGCCAGGATGAATACGAGAAGGACGGGTTTATAGTAGATGATGTGGAAGAAGAGGAGGAAGAGCAGGAGGAAGAAGAGGAGAGGGATAGTGATGAGGAGAGGCAAAGGAAGAAAAAGAGGAAGAAAAGAGAATCGGAGAAGAATTATGTTCTTGATGAAGATGACTACGAGTTGCTTCAGGACAACAATATTACAGGCTTTCATCGCCCGAAACCTGGGAGCAAAAAGTTCAAGCGGTTGAAAAAGGCTGGTAGAGATAGCGAGCAGGATGAGCCTCTTGGCTTTTCTGATGATGAAGGAGTTGATAAAAGTGGGCGTAGTGGGCGAACTGCTGAAGAGAAGCTCAAGCGCAGCTTATTTGGGGATGATGAAGGACCACCTCTGGAGGATATTGCTGAAGAAGAAGAACAACCGGAGGAAGAAGAAGATGGGGACATTGGTGAAGAGGATGAAATGGCTGATTTTATTGTGGATGAAGAAGAAGTTGATGAACATGGAGCTCCTGTGAGGCGGAGGAAACCGAACAGAAAGAAGGCAAGACAGGCACCTGGAGTTTCATCCTCTGCATTACAGGAAGCGCATGACATATTTGGTGATGTCGATGAGCTTTTGATGCTACGCAAAGAAGGCCTTGCAAAGAGTGGTAGGTATGATGAATCTGGTGAGTGGAGGGAAAAGAGACTGGAAGACGAATTTGAACCCTTCATACTTACTGAAAAGTACATGACTGAGAAGGATGACCAAATCCGAGAGATTGATATTCCGGAGAGGATACAGATGTCAGAAGAAATCACGGGTCCACCTCCAACTGATGCAATGAGTTTAGAAGAAGAGAGTAACTGGATACATAGCCAGTTTGCTGCAAGTATGGTGCCATTGTTTGGAAAGAAGAGGGGAAGGGATGGGGAAGGCATTGATCTATCAAGAAAAATAGACAAGGGTGACATTTTAAGGTTCCTAGAAATGTTGCATGTACAGAAGTATGATATTCCTTTTATTTCTATGTATCGGAAAGATCAATGCATGAGCCTATTGAGAGATCCGGAGCTGGATGAGGCAGAGTTTGAAGATGGGGATGACATTGAGAAGAAACCTACACTGAAGTGGCACAAGGTGCTTTGGGCCATCAGGGACTTGGACCGGAAATGGCTTCTTCTTCAAAAGCGCAAAAGTGCTCTTCAATTATACTATAATAAGCGTTTTGAAGAAGAATCTCGGAGGGTCGATCATGTACAAAGACTCAATTTGAATCAGCAGCTTTTTGAATCAATAACTCAGTCTCTGAAGTCTGCTGAATCTGAAAGAGAGGTAGATGATGTTGACTTAAAGTTTAATTTGCATTTCCCACCGGGTGAGGTAGGTGTGGAAGAAGGACAATTTAAGAGGCCAAAGAGGAAATCCCAATACAGCATTTGTAGTAAGGCTGGCCTATGGGAGGTTGCAAGCAAGTTTGGCTATAACTCTGAGCAATTTGGGTTACTTATAACTTTAGAAAAAATGAGATTAGATGAATTAGAAGATGCCAAAGAAACTCCTGAGGAGGTAGCTCTTGGTTTTAAGTGTGCAATGTTTGACACTCCTCAGGTAGTCCTCAAGGGTGCGAGGCACATGGCAGCTGTGGAGATAAGCTGTGAGCCATGTGTCAGGAAACATGTTCGTAGTATCTTTATGGAGAACGCAGTAGTCTCAACCAGTCCCACTTCTGATGGAAATACTGCTATAGATCCTTTTCATCAGTTTGCCGGAGTGAAATGGCTGCATGAAAAGCCACTGGTAGAATTTGAGGATGCTCAGTGGCTTCTTATCCAGAAGGCTGAAGAAGAGAAGCTCCTCCAAGTGGTTATCAAACTTCCAGAATCTGTCTTGCACAAGCTAATCAATGATTCACATGATTATTATCTCAGTGACGGTGTAAGTAAGTCTGCACAGCTCTGGAATGAGCAACGCAGATTGATCTTACATGATGCATTTTACAATTTTCTTCTTCCTTCCATGGAGAAAGAGGCTCGATCACTTTTGACAACTAGAGCAAAGAACTGGTTAGTAATGGAATATGGTAATCAGCTCTGGAACAAGGTGTCTGTTGCACCATATCAGCGCAAGGAAAGTGATGCTGCTTCAGATGATGAAACTGCACCAAGGGTAATGGCTTGCTGTTGGGGTCCTGGGAAGCCAGCGACTACATTTGTAATGCTGGATTCGTCAGGAGAAGTGCTAGATGTGTTGTACACAGGATCCCTGAGTCTTCGGTCTCAGAATGTTAATGACCAGCAGCGGAAGAAAAATGACCAACAACGTGTCCTTAAGTTCATGACTGACCACCAACCACATGTTGTTGTTCTTGGAGCCGTGAATTACTCTTGCTCAAAGTTGAAGGATGATATATATGAGATCATTTTTAAGATGGTGGAGGAACATCCTAGAGAAGTTGGGCAAGAGATGGATGGGATAAAAGTTGTTTATGGGGATGAATCCTTGCCTCGTCTCTATGAAAATTCACGACTTTCTTCAGATCAACTACCGGGGCAGTCAGGTATTGTTAAGAGGGCTGCAGCTCTTGGTCGTTATATTCAAAATCCTCTAGCGATGGTTGCTACACTATGTGGTCCAGGGGGGGAGGTTTTGTCATGGAAGCTTTGTCCTCTGGAGCAATTTCTTACTCCTGATGAGAAGTATGAAATGGTTGAACAGGTAATGGTTGATGTCACCAACCAAGTGGGCATTGACGTAAATTTAGCTGCTAGCCATGAATGGCTGTTTGCTCCTTTGCAATTTGTTTCTGGGCTTGGACCAAGAAAGGCTGCTTCTTTACAGAGGGCATTAGTGAGATCCGGAGCAATTTTTAGTCGCAAGGAGCTTACAATGAATGGACTTAAAAAGAAGGTGTTTATAAATGCTGTTGGTTTTTTACGTGTCCGTCGTAGTGGGTTGGCAAGTAATAGCAGCCATATAATCGATTTACTGGATGATACAAGAATTCATCCAGAGTCATATGATCTTGCGAAGGAATTGGCCCACGAAGTGTATAAGCACGAAATAGATGATGACCCGAATGATATGGATGATGATGTGCAGGAGATGGCAATAGAGCATGTAAGGGACAATCCCAAGGTGTTAAGAACCCTTAAGGTCAAAGAATATGCCACGGACAATAACCACACTAATAAATTAGCAACTCTTTGTGATATTAAAATGGAATTACTGCATGGATTTCTAGACTGGCGAAATCCTTACCAAGAACCAAGTCAGGATGAAGAGTTCTATATGATATCTGGCGAGACAGAGGATACCCTTGCTGAAGGACGATTTGTGCAGGCAACAGTTCGCAGGGTTCAAGCTCAACGAGCATTCTGTATACTTGAATCTGGTCTCACAGGGATACTTAACAGAGAGGAATTTTCAGATAAGCCAGTTCTTAATTTAACAGAGGAATTGAATGAAGGTGATATAATCACTTGCAAGATTAAACAAATTCAAAAGAACAGATACCAGGTGTTTCTAACTTGTAAAGAAAGTGAGTTAAGAAATAACCGCTATCTATATCCTCGAAATCGGGATCCCTACTACCGTGAGGACCCAAATAATGTTCAGAGTGAACAAGAGAAAGCCCGCAAGGAGAAGGAGCAAGCAAAGAAGCTTTTCAAGCCGAGAATGATTGTTCATCCCCGTTTTCAGAATATAACGGCTGATGAAGCTATGGAGTTCCTTTCAGATAAGGATGCTGGCGAAAGTATAATTAGACCCAGTTCAAGAGGACCGTCTTTCTTGACCTTGACTTTGAAGATTTATGATGGAGTTTATGCTCACAAGGACATAGTGGAAAGTGGTAAAGAACACAAGGATATTACGAGCTTGCTTCGTCTTGGGAAAACATTGAAAATTGGGGAAGACTCTTTTGAGGATTTGGATGAGGTTATGGATCGATATGTTGACCCTTTAGTAACACACTTGAAGGCTATGTTAAGTTACCGCAAATTCAGGAAGGGTACTAAGGCGGAAATTGATGACCTGTTGCGAGTTGAGAAATCAGAGCACCCAATGAGGATAGTATACTGTTTTGGCATTTCTCATGAACATCCTGGGACTTTTATTTTGTCTTATATACGGAGCACAAATCCTCACCATGAGTATATTGGTCTGTATCCCAAGGGATTCAAATTTCGGAAGCGAACATTTGAGGATATTGACCGGCTTGTGGCATATTTTCAAAGACATATTGATGATCTGCAGCATGACATGGCCCCATCTATCAGATCAGTTGCTGCCATGGTTCCAATGAAGAGCCCTGCTACTGGGGGTTCCTCTGGAGGGGCCTCTGTGGGAAGTGGTTGGGGTGCTTCTTCAGCAAACAGCACTGAAGGCGGGTGGAGGGGACATTCAAATTCTGACAGAGAGAGATCTTCTACACCAGGTTCAAGAACAGGCAGAAATGATTACAGAAATGGTAGTGGAAGAGATGCACATCCAAGTGGGTTGCCTAGACCCTATGGCGGACGGGGACGGGGCCGTGGATCATATAATAGTAAGGGAAATAATGGTAGCAATGAAAGACATGATTCTGGTTATGGTTCAAGATGGGGATCAGGTTCCAAGGATGGGGATGATGGATGGAGCAATTTTCCTGGTGCTAAGGTTCAGAATTCCCCTGGCAGAGAAGCATTCCCTGGTGGGTGGGGAAGTGGTGGAAGTGGCACTGGTGGTGGTGGTGGTAGTAGTGGCAGTGCTGTTGGTGGTTGGGGAGGTGGGAATGGTGATGGTGGTGGAAGTTGGGGTGGGGCTGGTAGTGGTGGGGGTTGGGATTCTTCTGGACAGAAAGGTGGTGGTGGTGTAGGGGATACTGGCTCTGATGTTGGTAATTCAGGGTGGGATGATGGCTCTAAGAGAAGTTCATCTCGGCCAGAGGGAGGAAATGGTTGGTCTGGAGGTGGTGCTGATGGATGGGGTGGCGGAGGTGGTGGAAATGGTGGTAGTGGCTGGTGA | 5121 | 44.54 | MGGRAVVSDDEEEVEEEEDEREVGDVEAVDDEERGDVDEDDEEEDEEGQDEYEKDGFIVDDVEEEEEEQEEEEERDSDEERQRKKKRKKRESEKNYVLDEDDYELLQDNNITGFHRPKPGSKKFKRLKKAGRDSEQDEPLGFSDDEGVDKSGRSGRTAEEKLKRSLFGDDEGPPLEDIAEEEEQPEEEEDGDIGEEDEMADFIVDEEEVDEHGAPVRRRKPNRKKARQAPGVSSSALQEAHDIFGDVDELLMLRKEGLAKSGRYDESGEWREKRLEDEFEPFILTEKYMTEKDDQIREIDIPERIQMSEEITGPPPTDAMSLEEESNWIHSQFAASMVPLFGKKRGRDGEGIDLSRKIDKGDILRFLEMLHVQKYDIPFISMYRKDQCMSLLRDPELDEAEFEDGDDIEKKPTLKWHKVLWAIRDLDRKWLLLQKRKSALQLYYNKRFEEESRRVDHVQRLNLNQQLFESITQSLKSAESEREVDDVDLKFNLHFPPGEVGVEEGQFKRPKRKSQYSICSKAGLWEVASKFGYNSEQFGLLITLEKMRLDELEDAKETPEEVALGFKCAMFDTPQVVLKGARHMAAVEISCEPCVRKHVRSIFMENAVVSTSPTSDGNTAIDPFHQFAGVKWLHEKPLVEFEDAQWLLIQKAEEEKLLQVVIKLPESVLHKLINDSHDYYLSDGVSKSAQLWNEQRRLILHDAFYNFLLPSMEKEARSLLTTRAKNWLVMEYGNQLWNKVSVAPYQRKESDAASDDETAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLSLRSQNVNDQQRKKNDQQRVLKFMTDHQPHVVVLGAVNYSCSKLKDDIYEIIFKMVEEHPREVGQEMDGIKVVYGDESLPRLYENSRLSSDQLPGQSGIVKRAAALGRYIQNPLAMVATLCGPGGEVLSWKLCPLEQFLTPDEKYEMVEQVMVDVTNQVGIDVNLAASHEWLFAPLQFVSGLGPRKAASLQRALVRSGAIFSRKELTMNGLKKKVFINAVGFLRVRRSGLASNSSHIIDLLDDTRIHPESYDLAKELAHEVYKHEIDDDPNDMDDDVQEMAIEHVRDNPKVLRTLKVKEYATDNNHTNKLATLCDIKMELLHGFLDWRNPYQEPSQDEEFYMISGETEDTLAEGRFVQATVRRVQAQRAFCILESGLTGILNREEFSDKPVLNLTEELNEGDIITCKIKQIQKNRYQVFLTCKESELRNNRYLYPRNRDPYYREDPNNVQSEQEKARKEKEQAKKLFKPRMIVHPRFQNITADEAMEFLSDKDAGESIIRPSSRGPSFLTLTLKIYDGVYAHKDIVESGKEHKDITSLLRLGKTLKIGEDSFEDLDEVMDRYVDPLVTHLKAMLSYRKFRKGTKAEIDDLLRVEKSEHPMRIVYCFGISHEHPGTFILSYIRSTNPHHEYIGLYPKGFKFRKRTFEDIDRLVAYFQRHIDDLQHDMAPSIRSVAAMVPMKSPATGGSSGGASVGSGWGASSANSTEGGWRGHSNSDRERSSTPGSRTGRNDYRNGSGRDAHPSGLPRPYGGRGRGRGSYNSKGNNGSNERHDSGYGSRWGSGSKDGDDGWSNFPGAKVQNSPGREAFPGGWGSGGSGTGGGGGSSGSAVGGWGGGNGDGGGSWGGAGSGGGWDSSGQKGGGGVGDTGSDVGNSGWDDGSKRSSSRPEGGNGWSGGGADGWGGGGGGNGGSGW | 1706 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nenu7g00908 | 1706 | FunFam | Transcription elongation factor spt6 | 506 | 774 | - | - | |
| Nenu7g00908 | 1706 | FunFam | Transcription elongation factor spt6 | 929 | 1022 | - | - | |
| Nenu7g00908 | 1706 | SUPERFAMILY | Tex N-terminal region-like | 358 | 740 | - | - | |
| Nenu7g00908 | 1706 | Gene3D | - | 750 | 1139 | IPR037027 | GO:0006139(InterPro) | |
| Nenu7g00908 | 1706 | SUPERFAMILY | SH2 domain | 1271 | 1357 | IPR036860 | - | |
| Nenu7g00908 | 1706 | MobiDBLite | consensus disorder prediction | 9 | 76 | - | - | |
| Nenu7g00908 | 1706 | Pfam | HHH domain | 1034 | 1122 | IPR041692 | - | |
| Nenu7g00908 | 1706 | SUPERFAMILY | RuvA domain 2-like | 1033 | 1123 | IPR010994 | - | |
| Nenu7g00908 | 1706 | Gene3D | SH2 domain | 1366 | 1461 | IPR036860 | - | |
| Nenu7g00908 | 1706 | Gene3D | - | 1140 | 1220 | IPR012340 | - | |
| Nenu7g00908 | 1706 | MobiDBLite | consensus disorder prediction | 1475 | 1706 | - | - | |
| Nenu7g00908 | 1706 | CDD | SH2-Nterm-SPT6-like | 1268 | 1356 | IPR035019 | - | |
| Nenu7g00908 | 1706 | MobiDBLite | consensus disorder prediction | 128 | 171 | - | - | |
| Nenu7g00908 | 1706 | SUPERFAMILY | RuvA domain 2-like | 931 | 1020 | IPR010994 | - | |
| Nenu7g00908 | 1706 | Gene3D | - | 515 | 953 | IPR023323 | - | |
| Nenu7g00908 | 1706 | CDD | SH2-Cterm-SPT6-like | 1367 | 1453 | IPR035018 | - | |
| Nenu7g00908 | 1706 | Gene3D | SH2 domain | 1254 | 1365 | IPR036860 | - | |
| Nenu7g00908 | 1706 | MobiDBLite | consensus disorder prediction | 1552 | 1568 | - | - | |
| Nenu7g00908 | 1706 | Pfam | Spt6, S1-OB domain | 1134 | 1219 | IPR049540 | - | |
| Nenu7g00908 | 1706 | Pfam | SH2 domain | 1238 | 1452 | IPR035420 | - | |
| Nenu7g00908 | 1706 | PANTHER | TRANSCRIPTION ELONGATION FACTOR SPT6 | 10 | 1516 | IPR017072 | GO:0006368(PANTHER)|GO:0008023(PANTHER)|GO:0031491(PANTHER)|GO:0034728(PANTHER)|GO:0042393(PANTHER)|GO:0140673(InterPro) | |
| Nenu7g00908 | 1706 | SMART | rnase-8s | 760 | 878 | IPR006641 | GO:0006139(InterPro) | |
| Nenu7g00908 | 1706 | Pfam | Helix-hairpin-helix motif | 920 | 1019 | IPR032706 | - | |
| Nenu7g00908 | 1706 | FunFam | Transcription elongation factor spt6 | 312 | 503 | - | - | |
| Nenu7g00908 | 1706 | SMART | S1-6 | 1146 | 1217 | IPR003029 | GO:0003676(InterPro) | |
| Nenu7g00908 | 1706 | FunFam | Transcription elongation factor spt6 | 750 | 915 | - | - | |
| Nenu7g00908 | 1706 | FunFam | Transcription elongation factor Spt6 | 1026 | 1121 | - | - | |
| Nenu7g00908 | 1706 | FunFam | Transcription elongation factor spt6 | 1254 | 1365 | - | - | |
| Nenu7g00908 | 1706 | MobiDBLite | consensus disorder prediction | 1666 | 1683 | - | - | |
| Nenu7g00908 | 1706 | PIRSF | Spt6 | 4 | 1528 | IPR017072 | GO:0140673(InterPro) | |
| Nenu7g00908 | 1706 | Gene3D | - | 311 | 514 | IPR023319 | - | |
| Nenu7g00908 | 1706 | MobiDBLite | consensus disorder prediction | 1 | 234 | - | - | |
| Nenu7g00908 | 1706 | Gene3D | - | 1028 | 1121 | IPR042066 | - | |
| Nenu7g00908 | 1706 | FunFam | Transcription elongation factor spt6 | 1366 | 1457 | - | - | |
| Nenu7g00908 | 1706 | MobiDBLite | consensus disorder prediction | 1479 | 1504 | - | - | |
| Nenu7g00908 | 1706 | SUPERFAMILY | Ribonuclease H-like | 760 | 915 | IPR012337 | - | |
| Nenu7g00908 | 1706 | MobiDBLite | consensus disorder prediction | 1230 | 1252 | - | - | |
| Nenu7g00908 | 1706 | MobiDBLite | consensus disorder prediction | 77 | 101 | - | - | |
| Nenu7g00908 | 1706 | Pfam | Acidic N-terminal SPT6 | 38 | 133 | IPR028083 | - | |
| Nenu7g00908 | 1706 | SUPERFAMILY | Nucleic acid-binding proteins | 1143 | 1221 | IPR012340 | - | |
| Nenu7g00908 | 1706 | ProSiteProfiles | S1 domain profile. | 1148 | 1217 | IPR003029 | GO:0003676(InterPro) | |
| Nenu7g00908 | 1706 | SUPERFAMILY | SH2 domain | 1403 | 1456 | IPR036860 | - | |
| Nenu7g00908 | 1706 | MobiDBLite | consensus disorder prediction | 173 | 208 | - | - | |
| Nenu7g00908 | 1706 | Coils | Coil | 59 | 88 | - | - | |
| Nenu7g00908 | 1706 | Gene3D | - | 279 | 1022 | - | - | |
| Nenu7g00908 | 1706 | Pfam | Holliday-junction resolvase-like of SPT6 | 758 | 915 | IPR028231 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nenu7g00908 | K11292 | transcription elongation factor SPT6 |