AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nenu7g00909 | ATGACTGCTCAGTCGCAAGAAGAGCTTCTTGCTGCTCATCTCGAACAGCAAAAGATTGAGCCAGATGAGCCTGTGGTTGAAGATGAAGAAGAAGAAGATGATGATGAGGATGAGGATGATGATGACAAGGATGAAGATGATGCTGAAGGTCAGCAAGGAGATGCTAGTGGTAGGTCAAAGCAGAGCAGAAGTGAGAAGAAGAGTCGCAAAGCAATGTTGAAGCTTGGAATGAAGCCCATCCCAGGTGTCAGCCGTGTGACTGTCAAGAAAAGCAAGAATATTCTATTTGTGATTTCAAAGCCAGATGTTTTCAAGAGCCCTACATCAGACACATATGTTGTTTTTGGGGAGGCAAAGATTGAGGACTTGAGCTCACAGTTACAGACACAAGCTGCAGAGCAGTTCAAGGCTCCTGATCTAAGCCATGTTGTATCTAAGCCTGAATCATCGGCCATGGCTCAGGAGGATGAAGAGGTCGACGAGACAGGTGTGGAACCCAAGGACATAGAGTTGGTGATGACACAAGCTGGAGTCTCTAGGTCGAAGGCTGTGAAAGCTCTCAAAGCTGCTGATGGGGATATTGTGTCTGCCATCATGGAGCTAACAAATTAA | 612 | 46.24 | MTAQSQEELLAAHLEQQKIEPDEPVVEDEEEEDDDEDEDDDDKDEDDAEGQQGDASGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVSKPESSAMAQEDEEVDETGVEPKDIELVMTQAGVSRSKAVKALKAADGDIVSAIMELTN | 203 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nenu7g00909 | 203 | Pfam | HYPK UBA domain | 163 | 202 | IPR044034 | - | |
| Nenu7g00909 | 203 | MobiDBLite | consensus disorder prediction | 138 | 163 | - | - | |
| Nenu7g00909 | 203 | CDD | NAC-NACA | 76 | 123 | - | - | |
| Nenu7g00909 | 203 | Pfam | NAC domain | 65 | 120 | IPR002715 | - | |
| Nenu7g00909 | 203 | FunFam | Putative nascent polypeptide-associated complex subunit alpha | 164 | 201 | - | - | |
| Nenu7g00909 | 203 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
| Nenu7g00909 | 203 | FunFam | Nascent polypeptide-associated complex (NAC), alpha subunit | 72 | 124 | - | - | |
| Nenu7g00909 | 203 | ProSiteProfiles | NAC A-B domain profile. | 62 | 127 | IPR002715 | - | |
| Nenu7g00909 | 203 | Gene3D | - | 71 | 124 | IPR038187 | - | |
| Nenu7g00909 | 203 | Gene3D | - | 164 | 201 | - | - | |
| Nenu7g00909 | 203 | MobiDBLite | consensus disorder prediction | 22 | 49 | - | - | |
| Nenu7g00909 | 203 | SMART | NAC-2 | 65 | 121 | IPR002715 | - | |
| Nenu7g00909 | 203 | PANTHER | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED | 3 | 202 | IPR016641 | GO:0005737(PANTHER)|GO:0005854(InterPro)|GO:0006612(PANTHER)|GO:0051082(PANTHER) | |
| Nenu7g00909 | 203 | CDD | UBA-NAC-euk | 166 | 202 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nenu7g00909 | K03626 | nascent polypeptide-associated complex subunit alpha |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nenu | Nenu-Chr3:71528694 | Nenu7g00909 | Nenu-Chr7:19855904 | transposed | |
| Nenu | Nenu-Chr2:73017410 | Nenu7g00909 | Nenu-Chr7:19855904 | wgd |