AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu7g00992 ATGGAACGAGGTCCTAGTCCAGATTCAGTTCCACATTCAGGTGCTGAGGATAAGTCTAGAGTCCTGAATGTAAGGCCTTTGCGTTGTTTGGCTCCCGTTTTCCCAACTCCGCATGGATTCACCACATTCACTGTTCCCCAAGCTCCTCCTTTTGTCTATGCACCCCCATTTGGTCCCTTTCCTCCCGGGTTCACTGCATTTTACCCCTTTTTCATCCCTACAGATCCTCAAAGACCACCAGAACAGCACACACAGACCCCGAGTGGAGCAACCACTCAAGCTGGTGTTTTTGGATTCGGTCATCCGGCACAAACTCCAACCACTCCAGTGCCTTTGTTTAGGCCACCTGCTCCTCCCCAACCGCCTCAGTTTGTAGGAACTTCAAATGGTAATGTAGGGTCATCAAAAAAGAGCTCCAGGCACCAGGAAGCTGGTGCACAGTCACAACCACAAGCAGCAAACAAGAGTGAGTCTGTTAGGTCAGCAATGGAAGAAGATGGGTGCAGTGATAACCAGAAGCGCCCCGCCCATAATATTAGTAGCTGCAATGTTCAATTCACAGATGTGGAAGCTACCAGCAGTGCTGAGAAGCAGAAGACCAAGTCAAACAAAAGAGTGAGGGAAAGCCAAGGGGTGAGGTTATCCTCAACAGGTGATGGTGATAGGGAGTCACTTGGACATATTCTCATGACATTTGATGCCATCAGGCGAAGGATTGCTCAAATTGAAGATGCAAGGGAGCCAACCTCTGGGACAATTAAACGTGCAGATCTGAGAGCTGGGACAATCATGTTAAACAATGGGCTCCGGGCAAATACAAGGAAGAGAATTGGAGCTGTTCCTGGAGTTGAGATTGGAGATGTTTACTTTTTCAGGATGGAGATGTGCTTGGTGGGATTGCATGCTCCATGTATGGCTGGAATAGACTACATGAGTCTCAGGTATGACCAAGAAGAAGAACCTGTGGCTGTAAGCATTGTTTCATCAGGAGCATATGAGGATGATGTGGATGATCCAGATATGTTGGTTTACAGTGGCCAAGGTGGAAACTTTAACAAGAAAAGTAAACAAGCAGTTGATCAGAAGCTTGAAAGGGGTAACCTTGCTTTGGAGAAAAGTTTGCGTCGGGCTAATGAGGTAAGAGTTATTCGAGGTATGAAGGATATAGGGAGCCCAACAGGGAAGGTCTATGTCTATGATGGTCTCTATAAGATCCAGGAATCTTGGATGGAGAAAGGGAAGTCAGGCTACAACGTTTTCAAATATAAATTGGTAAGGCTACAGGGGCAGCCTGCTGCATTTTCAATATGGAAATCTATTCAACAATGGAAGGAGAATATCACAACTAGGGCTGGTGTTATCTTGCCTGACCTGACCTCAGGGATGGAAAATTTACCTGTTTCCCTTGTAAATGATGTTGATGAGGAGAAAGGCCCTGCTTATTTCACTTATTTCCCTACCCTGAAACATTCAAAACCAGTCAGCTCAGCTGAACCTTCTCTTGGCTGTAATTGCCATGGTGGGTGCCAACCAGGTGATTCCAATTGCTCTTGCATTCAAAAGAATGCAGGCGATCTTCCCTATACTGGAAATGGTGTTCTTGTGATGCAGAAACCCTTGATATATGAGTGTGGCCCCTCTTGCCCATGCTATACTCAATGCAGAAATCGAGTGTCCCAGACTGGTTTAAAAGTTCACCTGGAGGTGTTTAAGACAAAGGATAAAGGTTGGGGTCTCAGGTCTTGGGATCCCATCCGTGCAGGTACATTTATTTGTGAATATGCAGGAGAAGTCATTGATTATATAAAAGTAGAGGAGGACAGTGAGGAAGAAGAACAAGATGAGTATATATTTGATTCCTCTCGCACTTATGACAACTCGTTGAAATGGAATTATGTACCTGAGTTACTAGGAGAAGAAGTTCTTGGAGACTCAAAAGAAACCAGCAAGCCTCCACAGTCTGTTATGATAACTGCAAAGAATTTTGGGAATGTGGCTCGTTTTATGAACCACAGTTGTTCCCCTAATGTCTTTTGGCAGCCAGTCTTGCAAGAGCACAAAAAAGAATCACATATTCACATTGCATTCTATGCAATCAGACATATTCCTCCCATGACAGAGTTGACATATGACTATGGGATAAGCGGAACCCAAAGTTCGTACCACAGGAAGAAAAAATGTTTCTGTGGATCTTTAAACTGCAGATCATATTTTGGTTAG 2220 44.73 MERGPSPDSVPHSGAEDKSRVLNVRPLRCLAPVFPTPHGFTTFTVPQAPPFVYAPPFGPFPPGFTAFYPFFIPTDPQRPPEQHTQTPSGATTQAGVFGFGHPAQTPTTPVPLFRPPAPPQPPQFVGTSNGNVGSSKKSSRHQEAGAQSQPQAANKSESVRSAMEEDGCSDNQKRPAHNISSCNVQFTDVEATSSAEKQKTKSNKRVRESQGVRLSSTGDGDRESLGHILMTFDAIRRRIAQIEDAREPTSGTIKRADLRAGTIMLNNGLRANTRKRIGAVPGVEIGDVYFFRMEMCLVGLHAPCMAGIDYMSLRYDQEEEPVAVSIVSSGAYEDDVDDPDMLVYSGQGGNFNKKSKQAVDQKLERGNLALEKSLRRANEVRVIRGMKDIGSPTGKVYVYDGLYKIQESWMEKGKSGYNVFKYKLVRLQGQPAAFSIWKSIQQWKENITTRAGVILPDLTSGMENLPVSLVNDVDEEKGPAYFTYFPTLKHSKPVSSAEPSLGCNCHGGCQPGDSNCSCIQKNAGDLPYTGNGVLVMQKPLIYECGPSCPCYTQCRNRVSQTGLKVHLEVFKTKDKGWGLRSWDPIRAGTFICEYAGEVIDYIKVEEDSEEEEQDEYIFDSSRTYDNSLKWNYVPELLGEEVLGDSKETSKPPQSVMITAKNFGNVARFMNHSCSPNVFWQPVLQEHKKESHIHIAFYAIRHIPPMTELTYDYGISGTQSSYHRKKKCFCGSLNCRSYFG 739
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu7g00992 739 ProSiteProfiles YDG domain profile. 278 426 IPR003105 -
Nenu7g00992 739 ProSiteProfiles Post-SET domain profile. 723 739 IPR003616 -
Nenu7g00992 739 SMART G9a-1 273 430 IPR003105 -
Nenu7g00992 739 MobiDBLite consensus disorder prediction 108 123 - -
Nenu7g00992 739 SUPERFAMILY SET domain 441 729 IPR046341 -
Nenu7g00992 739 MobiDBLite consensus disorder prediction 194 208 - -
Nenu7g00992 739 ProSiteProfiles SET domain profile. 565 713 IPR001214 GO:0005515(InterPro)
Nenu7g00992 739 MobiDBLite consensus disorder prediction 73 220 - -
Nenu7g00992 739 Pfam SAD-SRA domain 276 430 IPR003105 -
Nenu7g00992 739 MobiDBLite consensus disorder prediction 78 93 - -
Nenu7g00992 739 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 130 739 IPR025794 GO:0042054(InterPro)
Nenu7g00992 739 MobiDBLite consensus disorder prediction 124 158 - -
Nenu7g00992 739 Gene3D - 261 447 IPR036987 -
Nenu7g00992 739 SMART set-7 565 719 IPR001214 GO:0005515(InterPro)
Nenu7g00992 739 Pfam Pre-SET motif 460 557 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Nenu7g00992 739 ProSiteProfiles Pre-SET domain profile. 501 562 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Nenu7g00992 739 SUPERFAMILY PUA domain-like 260 449 IPR015947 -
Nenu7g00992 739 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 261 445 - -
Nenu7g00992 739 Pfam SET domain 576 713 IPR001214 GO:0005515(InterPro)
Nenu7g00992 739 MobiDBLite consensus disorder prediction 173 193 - -
Nenu7g00992 739 SMART preset-2 455 549 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Nenu7g00992 739 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 107 736 IPR051357 GO:0003690(PANTHER)|GO:0016571(PANTHER)|GO:0042054(PANTHER)
Nenu7g00992 739 Gene3D SET domain 448 738 IPR046341 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu7g00992 K24405 [histone H3]-lysine9 N-dimethyltransferase [EC:2.1.1.368]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:59801709 Nenu7g00992 Nenu-Chr7:21472576 dispersed
Nenu Nenu-Chr3:52200601 Nenu7g00992 Nenu-Chr7:21472576 dispersed
Nenu Nenu-Chr4:85250440 Nenu7g00992 Nenu-Chr7:21472576 dispersed
Nenu Nenu-Chr6:35487724 Nenu7g00992 Nenu-Chr7:21472576 dispersed
Nenu Nenu-Chr7:21472576 Nenu1g00500 Nenu-Chr1:13895448 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nenu1g00500 . 144 669 Su(var)3-9 homologs gene family AT5G04940 40.26 7.23e-117 375.0
Nenu1g02108 . 379 665 Su(var)3-9 homologs gene family AT1G73100 28.909 7.15e-31 127.0
Nenu1g02153 . 155 641 Su(var)3-9 homologs gene family AT5G04940 40.631 8.25e-113 352.0
Nenu3g01423 . 155 542 Su(var)3-9 homologs gene family AT5G04940 43.687 7.59e-96 305.0
Nenu3g01437 . 378 665 Su(var)3-9 homologs gene family AT1G73100 28.529 2.82e-30 125.0
Nenu6g01003 . 155 635 Su(var)3-9 homologs gene family AT5G04940 40.524 1.79e-104 341.0
Nenu6g01842 . 367 621 Su(var)3-9 homologs gene family AT1G73100 31.25 3.42e-24 101.0
Nenu7g00992 . 1 669 Su(var)3-9 homologs gene family AT1G73100 49.462 0.0 698.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Nenu SAD_SRA 1.1e-51 CL0178 TR SET