AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu7g01004 ATGAGCCGACACCCAACTTTGAAGTGGGCTCAGCGGTCAGATAAGATCTACTTGACGGTTGATTTACCTGATGCCAAGGATGTGAAACTGAAGCTCGAGCCTGAAGGGAAATTCATTTTCTCTGCCACCAAAGACAATCTCCCTTACGAAGTTGACATTGATCTGCATGACAAAGTCAACGTTGAGGAGAGCAAGGTTAGTATTGGTGTGAGGAGCATTGTCTATGTCATAGAGAAAGCTGAGAAGAAATGGTGGGGCAGGCTACTTAAGCAAGAGGGGAAACCACCTGTATTTCTCAAGGTGGATTGGGATAAATGGGTTGATGAGGAGGATGAGAATGAGAAAGCTGGCATGGACTTCGATGACATGGATTTCTCAAAGTTAGACATGGGTGGGGATGATTATGATATGGATGAACCCAAAGACGAGGAAGAAGAGATCGAAGCAAAAGAAGAGGAAGAAGAAAGTAAAAAGGAAGGAGAACCTGTTGCAACAGATGCTGAGGCGGCTAAAGCTTGA 519 44.89 MSRHPTLKWAQRSDKIYLTVDLPDAKDVKLKLEPEGKFIFSATKDNLPYEVDIDLHDKVNVEESKVSIGVRSIVYVIEKAEKKWWGRLLKQEGKPPVFLKVDWDKWVDEEDENEKAGMDFDDMDFSKLDMGGDDYDMDEPKDEEEEIEAKEEEEESKKEGEPVATDAEAAKA 172
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu7g01004 172 Pfam CS domain 6 79 IPR007052 -
Nenu7g01004 172 MobiDBLite consensus disorder prediction 135 152 - -
Nenu7g01004 172 Gene3D - 2 125 IPR008978 -
Nenu7g01004 172 MobiDBLite consensus disorder prediction 111 172 - -
Nenu7g01004 172 SUPERFAMILY HSP20-like chaperones 1 137 IPR008978 -
Nenu7g01004 172 MobiDBLite consensus disorder prediction 153 172 - -
Nenu7g01004 172 CDD p23-hB-ind1-like 5 111 - -
Nenu7g01004 172 PANTHER TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE 1 154 IPR045250 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)|GO:0051087(PANTHER)|GO:0051131(PANTHER)|GO:0051879(PANTHER)|GO:0051879(InterPro)
Nenu7g01004 172 MobiDBLite consensus disorder prediction 119 134 - -
Nenu7g01004 172 FunFam Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 125 - -
Nenu7g01004 172 ProSiteProfiles CS domain profile. 2 89 IPR007052 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu7g01004 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr1:102047171 Nenu7g01004 Nenu-Chr7:21752278 dispersed
Nenu Nenu-Chr4:15174974 Nenu7g01004 Nenu-Chr7:21752278 dispersed
Nenu Nenu-Chr7:21752278 Nenu3g00406 Nenu-Chr3:8738060 transposed