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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu7g01007 ATGTCTTCAAAAGATATGGCCCCAAAGAAGCCCAAGAGGCTCTACCAAGCATGGAAGGGAAGCAACAATTTTTTTTGTGGTGGGAGAATGATCTTTGGTCCCGATGTTTCATCGCTGTTTCTATCCACATTCCTAATAGGCGGACCCGCCCTAACATTTTGCATACAAAGTTTTGCAAAAGCAAAAGTCCCAGAACAATTTCTTGGGTATCCTATACCAACTGTGGGATTGATTGTAACAATATTGGATTTGACATTTCTTTTCTTGACATCGGGTAGAGATCCAGGTATAGTCCCCAGGAATGCACGACCTCCAGAATCAGAAGAATCTTATCATATGTCTACCTCATCTATGGAATGGGTGAATGGAAGACTTCCTCAATTAAGATTACCCCGTACAAAGGATGTGATAATAAATGGTCACATAGTAAAAGTGAAGTTTTGTGATACTTGTTTGCTTTATCGTCCACCTCGTGCTTCTCATTGCTCAATCTGCAACAATTGTGTACAGAGGTTTGATCACCACTGTCCATGGGTTGGTCAGTGTATCGGAGTGCGTAACTATAGGTTTTTCTACATGTTTATTTCATCATCCACCTTCTTGTGCATGTATGTCTTTGTATTTTCCTGGGTCAATCTTCTTAAACAAAGGAATGGGCGGTCACTGTGGAAGACTATGTCAAATGAGGTTCTGTCAGTTATTCTCATAGTCTACTGCTTCATAGCAATCTGGTTTGTTGGTGGGCTAACAATGTTCCATTTCTATCTGATTTGCACAAACCAGACAACTTATGAGAACTTTCGGTACCGCTATGATAAGAAGGAGAACCCATATAATAAAGGGATGGCGAGGAACATTAGAGAACTATTTTTCTCAAAAATACCACCTTCGTTGAATGATTTCCGTTCATGGGTGGTGGAGGATGATCAGGAAGAAGCAGAATCTATTGCTTCAAAGAGGGGTGGAAGCATCATTAATCGAAAAGAAAAAGTTGACCTAGAAATGAGAAGTAAACTTGCAGAGGATGGGAGTATTTCACTTCCTGGAATACTACAGAATCTGGATTACAATGGTATTGAAAGTAACTTGAAGAATAAGGATGCAAAAGAAGGTATTGTATTTGATCCGTTTTTCTTTCCTGTGGATCAAGAACAGCGAGATCCTGGATGGAACTCTACTGGTGGAGCTAAGACTCTTACAGATGAAAGGAATGTACAAAAGAGTTCCCTTCCAACCGAAACACTGGTTGTTCATGCATAG 1260 40.24 MSSKDMAPKKPKRLYQAWKGSNNFFCGGRMIFGPDVSSLFLSTFLIGGPALTFCIQSFAKAKVPEQFLGYPIPTVGLIVTILDLTFLFLTSGRDPGIVPRNARPPESEESYHMSTSSMEWVNGRLPQLRLPRTKDVIINGHIVKVKFCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGVRNYRFFYMFISSSTFLCMYVFVFSWVNLLKQRNGRSLWKTMSNEVLSVILIVYCFIAIWFVGGLTMFHFYLICTNQTTYENFRYRYDKKENPYNKGMARNIRELFFSKIPPSLNDFRSWVVEDDQEEAESIASKRGGSIINRKEKVDLEMRSKLAEDGSISLPGILQNLDYNGIESNLKNKDAKEGIVFDPFFFPVDQEQRDPGWNSTGGAKTLTDERNVQKSSLPTETLVVHA 419
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu7g01007 419 Pfam DHHC palmitoyltransferase 146 268 IPR001594 GO:0016409(InterPro)
Nenu7g01007 419 ProSiteProfiles DHHC domain profile. 146 196 - -
Nenu7g01007 419 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 69 315 - GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0006612(PANTHER)|GO:0018230(PANTHER)|GO:0019706(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu7g01007 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr4:86205612 Nenu7g01007 Nenu-Chr7:21812007 dispersed
Nenu Nenu-Chr5:79059585 Nenu7g01007 Nenu-Chr7:21812007 dispersed
Nenu Nenu-Chr6:5356624 Nenu7g01007 Nenu-Chr7:21812007 dispersed
Nenu Nenu-Chr7:21812007 Nenu8g00939 Nenu-Chr8:17272439 dispersed
Nenu Nenu-Chr7:21812007 Nenu3g04063 Nenu-Chr3:107485672 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Nenu1g00056 . 1 295 Lipid Metabolism gene family AT4G22750 55.229 1.24e-102 301.0
Nenu1g00122 . 54 247 Lipid Metabolism gene family AT1G67730 28.44 3.26e-12 64.7
Nenu1g00549 . 15 127 Lipid Metabolism gene family AT5G51210 51.724 5.34e-40 129.0
Nenu1g00664 . 56 133 Lipid Metabolism gene family AT5G05580 60.976 6.52e-26 99.8
Nenu1g00781 . 233 346 Lipid Metabolism gene family AT3G61300 30.435 1.72e-10 62.0
Nenu1g00850 . 1 294 Lipid Metabolism gene family AT4G12110 71.769 1.04e-167 465.0
Nenu1g00856 . 1 623 Lipid Metabolism gene family AT1G02190 56.09 0.0 679.0
Nenu1g00857 . 1 630 Lipid Metabolism gene family AT1G02190 56.535 0.0 702.0
Nenu1g00858 . 1 606 Lipid Metabolism gene family AT2G37700 56.361 0.0 698.0
Nenu1g00865 . 1 290 Lipid Metabolism gene family AT4G22750 66.007 3.50e-129 369.0
Nenu1g01026 . 3 1011 Lipid Metabolism gene family AT4G11610 70.294 0.0 1513.0
Nenu1g01213 . 1 449 Lipid Metabolism gene family AT2G46210 62.806 0.0 597.0
Nenu1g01716 . 2 168 Lipid Metabolism gene family AT3G22600 46.108 2.00e-43 140.0
Nenu1g01717 . 5 170 Lipid Metabolism gene family AT3G22600 45.263 1.95e-40 134.0
Nenu1g01718 . 3 161 Lipid Metabolism gene family AT3G22600 40.462 1.27e-29 105.0
Nenu1g01719 . 2 161 Lipid Metabolism gene family AT3G22600 46.073 1.15e-44 144.0
Nenu1g01720 . 1 171 Lipid Metabolism gene family AT2G48140 42.778 1.57e-37 127.0
Nenu1g02390 . 1 423 Lipid Metabolism gene family AT4G22340 79.905 0.0 717.0
Nenu1g02568 . 21 126 Lipid Metabolism gene family AT3G22600 56.604 3.23e-33 116.0
Nenu1g02920 . 13 332 Lipid Metabolism gene family AT4G04930 81.875 0.0 557.0
Nenu1g03828 . 36 152 Lipid Metabolism gene family AT5G64080 56.78 3.27e-38 130.0
Nenu1g03971 . 505 604 Lipid Metabolism gene family AT1G74720 34.0 1.15e-10 57.0
Nenu1g04396 . 3 1115 Lipid Metabolism gene family AT5G09350 64.965 0.0 1427.0
Nenu1g04663 . 4 332 Lipid Metabolism gene family AT4G04930 79.331 0.0 565.0
Nenu1g04955 . 49 271 Lipid Metabolism gene family AT4G22750 27.347 9.35e-17 78.6
Nenu1g05316 . 251 366 Lipid Metabolism gene family AT3G61300 30.645 7.45e-14 74.3
Nenu1g05416 . 296 449 Lipid Metabolism gene family AT1G22610 35.669 5.34e-16 81.3
Nenu1g06653 . 4 381 Lipid Metabolism gene family AT2G33630 30.357 6.29e-34 131.0
Nenu2g00389 . 246 504 Lipid Metabolism gene family AT3G61300 26.408 2.22e-11 64.7
Nenu2g00408 . 2 433 Lipid Metabolism gene family AT5G05580 70.11 0.0 656.0
Nenu2g00600 . 296 417 Lipid Metabolism gene family AT1G22610 35.385 1.33e-10 56.6
Nenu2g00628 . 66 271 Lipid Metabolism gene family AT4G22750 35.909 1.54e-32 119.0
Nenu2g00677 . 1 261 Lipid Metabolism gene family AT1G07420 85.441 3.39e-170 469.0
Nenu2g01146 . 1 339 Lipid Metabolism gene family AT5G19980 72.515 1.41e-176 491.0
Nenu2g01315 . 222 468 Lipid Metabolism gene family AT3G61300 23.929 1.71e-11 65.5
Nenu2g01615 . 1 627 Lipid Metabolism gene family AT5G57800 66.029 0.0 862.0
Nenu2g01915 . 105 296 Lipid Metabolism gene family AT2G39290 80.0 4.23e-106 313.0
Nenu2g02042 . 56 290 Lipid Metabolism gene family AT5G06850 26.984 4.26e-11 63.9
Nenu2g02057 . 2 430 Lipid Metabolism gene family AT5G05580 72.523 0.0 673.0
Nenu2g02244 . 66 270 Lipid Metabolism gene family AT4G22750 35.648 1.81e-32 119.0
Nenu2g02300 . 1 261 Lipid Metabolism gene family AT1G07420 85.441 1.07e-171 473.0
Nenu2g02428 . 1 303 Lipid Metabolism gene family AT2G34980 72.368 2.18e-137 389.0
Nenu2g02507 . 28 271 Lipid Metabolism gene family AT4G22750 35.798 5.70e-33 120.0
Nenu2g03087 . 1 1017 Lipid Metabolism gene family AT3G03680 71.596 0.0 1461.0
Nenu2g03766 . 1 773 Lipid Metabolism gene family AT3G57880 87.773 0.0 1446.0
Nenu2g03834 . 1 381 Lipid Metabolism gene family AT3G12120 75.328 0.0 622.0
Nenu3g00511 . 8 794 Lipid Metabolism gene family AT5G06850 76.076 0.0 1317.0
Nenu3g01058 . 1 227 Lipid Metabolism gene family AT1G68000 70.044 3.92e-120 339.0
Nenu3g01222 . 10 380 Lipid Metabolism gene family AT2G33630 31.51 4.10e-49 175.0
Nenu3g02077 . 54 247 Lipid Metabolism gene family AT1G67730 28.636 2.42e-12 65.1
Nenu3g02243 . 69 260 Lipid Metabolism gene family AT4G22750 28.218 6.50e-17 79.3
Nenu3g02719 . 180 287 Lipid Metabolism gene family AT1G15080 66.667 1.10e-49 158.0
Nenu3g02720 . 50 334 Lipid Metabolism gene family AT3G02600 67.458 1.47e-153 435.0
Nenu3g02721 . 51 363 Lipid Metabolism gene family AT3G02600 59.062 2.30e-140 399.0
Nenu3g02761 . 7 270 Lipid Metabolism gene family AT3G02580 78.788 1.32e-163 453.0
Nenu3g02802 . 3 132 Lipid Metabolism gene family AT5G17980 32.308 5.92e-09 57.4
Nenu3g02871 . 1 689 Lipid Metabolism gene family AT1G73920 69.798 0.0 956.0
Nenu3g02909 . 1 166 Lipid Metabolism gene family AT3G18570 50.292 2.82e-48 152.0
Nenu3g03196 . 104 159 Lipid Metabolism gene family AT4G22750 39.286 4.92e-09 56.2
Nenu3g03633 . 41 163 Lipid Metabolism gene family AT5G40420 56.098 3.81e-40 131.0
Nenu3g03747 . 1 318 Lipid Metabolism gene family AT1G67730 65.938 5.05e-170 473.0
Nenu3g03962 . 54 260 Lipid Metabolism gene family AT4G22750 28.7 9.87e-18 81.6
Nenu3g04063 . 50 262 Lipid Metabolism gene family AT4G22750 28.216 5.67e-16 76.6
Nenu4g00052 . 21 311 Lipid Metabolism gene family AT1G67730 25.228 8.86e-09 54.3
Nenu4g00102 . 194 297 Lipid Metabolism gene family AT5G12970 32.381 4.30e-08 55.1
Nenu4g00212 . 1 294 Lipid Metabolism gene family AT4G12110 67.347 9.92e-159 442.0
Nenu4g00215 . 1 608 Lipid Metabolism gene family AT2G37700 57.051 0.0 674.0
Nenu4g00216 . 1 605 Lipid Metabolism gene family AT2G37700 56.393 0.0 686.0
Nenu4g00222 . 1 290 Lipid Metabolism gene family AT4G22750 65.563 4.41e-131 373.0
Nenu4g00445 . 28 259 Lipid Metabolism gene family AT4G22750 27.059 4.10e-13 67.8
Nenu4g00508 . 6 1036 Lipid Metabolism gene family AT5G48060 66.976 0.0 1439.0
Nenu4g00937 . 51 237 Lipid Metabolism gene family AT4G22750 26.904 9.98e-13 67.0
Nenu4g01160 . 115 260 Lipid Metabolism gene family AT4G22750 30.769 1.15e-16 78.6
Nenu4g01166 . 14 377 Lipid Metabolism gene family AT3G12120 76.099 0.0 601.0
Nenu4g01173 . 107 177 Lipid Metabolism gene family AT4G22750 45.07 2.55e-13 68.6
Nenu4g01832 . 1 288 Lipid Metabolism gene family AT1G15080 78.547 1.34e-163 456.0
Nenu4g01833 . 46 363 Lipid Metabolism gene family AT3G02600 65.06 7.29e-160 450.0
Nenu4g01867 . 7 274 Lipid Metabolism gene family AT3G02580 79.478 4.61e-165 457.0
Nenu4g01911 . 41 330 Lipid Metabolism gene family AT3G57880 28.664 6.13e-18 87.0
Nenu4g01992 . 1 674 Lipid Metabolism gene family AT1G73920 69.083 0.0 906.0
Nenu4g02424 . 14 981 Lipid Metabolism gene family AT3G01380 71.341 0.0 1417.0
Nenu4g02529 . 930 1075 Lipid Metabolism gene family AT5G09350 25.0 1.79e-07 53.9
Nenu4g02624 . 23 155 Lipid Metabolism gene family AT3G01570 54.887 2.90e-46 147.0
Nenu4g02754 . 7 318 Lipid Metabolism gene family AT1G67730 67.308 3.41e-169 474.0
Nenu4g02976 . 50 260 Lipid Metabolism gene family AT4G22750 29.075 1.80e-19 87.0
Nenu4g03082 . 50 263 Lipid Metabolism gene family AT4G22750 28.947 3.45e-16 77.0
Nenu5g00264 . 3 270 Lipid Metabolism gene family AT5G60510 44.595 1.43e-81 246.0
Nenu5g00351 . 10 1081 Lipid Metabolism gene family AT1G74720 68.46 0.0 1466.0
Nenu5g00490 . 1 1029 Lipid Metabolism gene family AT1G22610 67.905 0.0 1436.0
Nenu5g00589 . 3 370 Lipid Metabolism gene family AT1G76340 77.333 0.0 580.0
Nenu5g01213 . 246 501 Lipid Metabolism gene family AT3G61300 26.978 1.28e-12 68.9
Nenu5g01230 . 3 1115 Lipid Metabolism gene family AT5G09350 64.69 0.0 1427.0
Nenu5g02216 . 88 399 Lipid Metabolism gene family AT3G01380 23.926 2.81e-08 56.2
Nenu5g02886 . 247 513 Lipid Metabolism gene family AT3G61300 26.69 6.14e-13 69.7
Nenu5g02971 . 58 251 Lipid Metabolism gene family AT4G22750 27.551 3.00e-12 64.3
Nenu5g03024 . 9 269 Lipid Metabolism gene family AT5G60510 44.815 2.24e-82 247.0
Nenu5g03066 . 117 158 Lipid Metabolism gene family AT4G22750 45.238 4.57e-07 50.4
Nenu5g03086 . 1 480 Lipid Metabolism gene family AT2G33630 70.686 0.0 731.0
Nenu6g00203 . 95 302 Lipid Metabolism gene family AT4G22750 25.806 5.68e-12 63.9
Nenu6g00318 . 247 462 Lipid Metabolism gene family AT3G61300 30.396 6.40e-12 66.6
Nenu6g00584 . 1 1049 Lipid Metabolism gene family AT5G17980 64.635 0.0 1403.0
Nenu6g00785 . 1 1011 Lipid Metabolism gene family AT4G11610 70.955 0.0 1519.0
Nenu6g00913 . 92 431 Lipid Metabolism gene family AT2G44520 69.663 3.47e-177 501.0
Nenu6g01161 . 49 430 Lipid Metabolism gene family AT2G45150 70.483 0.0 537.0
Nenu6g01250 . 1 170 Lipid Metabolism gene family AT3G22600 47.059 4.59e-42 137.0
Nenu6g01251 . 4 170 Lipid Metabolism gene family AT3G22600 48.81 7.39e-44 141.0
Nenu6g01252 . 4 170 Lipid Metabolism gene family AT3G22600 48.649 1.51e-49 156.0
Nenu6g01253 . 2 170 Lipid Metabolism gene family AT3G22600 44.162 1.27e-42 139.0
Nenu6g01254 . 3 171 Lipid Metabolism gene family AT3G22600 46.524 1.09e-46 151.0
Nenu6g01256 . 2 136 Lipid Metabolism gene family AT3G22600 45.926 1.82e-36 123.0
Nenu6g01422 . 233 346 Lipid Metabolism gene family AT3G61300 33.043 4.55e-11 63.9
Nenu6g02241 . 10 142 Lipid Metabolism gene family AT4G29460 52.632 2.93e-50 158.0
Nenu6g02340 . 105 516 Lipid Metabolism gene family AT2G19450 74.286 0.0 673.0
Nenu7g00183 . 1 383 Lipid Metabolism gene family AT3G12120 74.674 0.0 617.0
Nenu7g01007 . 78 284 Lipid Metabolism gene family AT4G22750 26.609 1.81e-15 74.7
Nenu7g01092 . 31 153 Lipid Metabolism gene family AT3G43720 52.846 1.79e-35 122.0
Nenu7g01243 . 3 370 Lipid Metabolism gene family AT1G76340 77.419 0.0 567.0
Nenu7g01320 . 56 236 Lipid Metabolism gene family AT1G67730 32.065 8.51e-20 86.7
Nenu7g01466 . 1 237 Lipid Metabolism gene family AT2G34770 73.84 3.23e-136 380.0
Nenu7g01590 . 81 396 Lipid Metabolism gene family AT3G01380 23.423 2.43e-10 62.8
Nenu7g01702 . 111 237 Lipid Metabolism gene family AT4G22750 27.737 1.25e-07 52.4
Nenu8g00221 . 1 322 Lipid Metabolism gene family AT5G19980 72.136 8.57e-168 468.0
Nenu8g00375 . 14 137 Lipid Metabolism gene family AT2G25890 58.065 2.26e-45 143.0
Nenu8g00711 . 1 328 Lipid Metabolism gene family AT5G19980 58.912 2.78e-125 360.0
Nenu8g00899 . 203 490 Lipid Metabolism gene family AT5G12970 24.451 3.22e-10 61.2
Nenu8g00913 . 145 185 Lipid Metabolism gene family AT1G07420 78.049 1.47e-14 66.2
Nenu8g01444 . 17 121 Lipid Metabolism gene family AT1G74720 52.778 7.89e-29 108.0
Nenu8g01771 . 27 100 Lipid Metabolism gene family AT4G29470 48.052 8.76e-20 79.7