AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu7g01023 ATGGGCTCCGATGCGGATATGGAGGATTATGGATTTGAGTACTCGGACGAGGAGCCAGAAGAGCAGGATGTTGACATCGAGAACCAATATTACAATTCCAAAGGTTTGGTTGAAACTGATCCTGAAGGAGCACTTGCTGGTTTTGCTGAAGTTGTTCGCATGGAACCAGAGAAGGCAGAGTGGGGATTCAAGGCTTTAAAGCAAACTGTTAAGCTCTATTATCGGCTAGGGAGATACAAAGAGATGATGGAAGCTTATAGAGTGATGTTGACATATATTAAATCAGCCGTAACACGAAATTATAGTGAAAAATGTATAAACAACATCATGGATTTTGTTTCTGGATCAGCTAGTCAGAACTTTGATCTTCTGCAAGAGTTCTATCAGACCACTCTGAAAGCCCTTGAAGAGGCAAAGAATGAGAGATTGTGGTTCAAAACAAATCTTAAGCTTTGCAAGATTTGGTTTGATATGGGTGAATATGCACGAATGAATAAGATTTTGAAGGAGCTTCACAAATCTTGTCGAAGAGAAGATGGAACTGATGATCAGAAGAAAGGAACACAGCTTTTGGAGGTTTATGCAATTGAGATTCAAATGTACACCGAGACCAAGAACAATAAAAAACTCAAGCAACTATATCAGAAAGCACTGTCAATCAAATCAGCAATACCTCATCCACGGATCATGGGGATTATTCATGAATGTGGTGGGAAAATGCATATGGCAGAACGCCAATGGGCAGAAGCAGCCACAGATTTCTTTGAAGCCTTCAAGAACTATGATGAAGCTGGAAATCAGCGACGCATCCAATGCTTGAAATACTTGGTTCTGGCCAACATGCTTATGGAATCTGAAGTTAACCCTTTTGATGGACAGGAGGCAAAGCCGTACAAAAATGATCCTGAAATTCTGGCTATGACAAATCTGATAGCAGCTTATCAACGGAATGAAATCTTGGAGTTTGAAAAGATCCTTAAGAGTAATAGAAGGACAATAATGGATGATCCTTTCATCAGAAATTATATTGAGGATCTGTTGAAGAATATAAGAACCCAAGTGTTGCTTAAGCTGATCAAACCTTATACAAGAATCCGGATTCCTTTTATATCGAAGGAGCTCAATGTGCCAGAGAAAGATGTTGAGCAGTTGCTGGTTTCATTAATTTTGGATAACCGTATTCAAGGGCACATCGATCAAGTAAACCGACTCTTAGAGCGTGGTGACAGGTCCAAGGGGATGAAAAAATATGCTGCCATAGAGAAATGGAACACACAACTTAGGTCCCTGTATCAGACTGTCAGCAACCGAATAGGATAA 1320 40.15 MGSDADMEDYGFEYSDEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAEWGFKALKQTVKLYYRLGRYKEMMEAYRVMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFDLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYARMNKILKELHKSCRREDGTDDQKKGTQLLEVYAIEIQMYTETKNNKKLKQLYQKALSIKSAIPHPRIMGIIHECGGKMHMAERQWAEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIQGHIDQVNRLLERGDRSKGMKKYAAIEKWNTQLRSLYQTVSNRIG 439
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu7g01023 439 SMART PCI-PINT associated module 165 339 - -
Nenu7g01023 439 Pfam PCI domain 326 406 IPR000717 -
Nenu7g01023 439 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11-COP9 SIGNALOSOME COMPLEX SUBUNIT 2 2 438 IPR050871 GO:0000338(PANTHER)|GO:0008180(PANTHER)
Nenu7g01023 439 FunFam COP9 signalosome complex subunit 2 64 439 - -
Nenu7g01023 439 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 341 423 IPR000717 -
Nenu7g01023 439 Gene3D - 64 438 - -
Nenu7g01023 439 ProSiteProfiles PCI domain profile. 243 412 IPR000717 -
Nenu7g01023 439 SUPERFAMILY Winged helix DNA-binding domain 335 411 IPR036390 -
Nenu7g01023 439 MobiDBLite consensus disorder prediction 1 23 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu7g01023 K12176 COP9 signalosome complex subunit 2