AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu7g01045 ATGCTCATCCATTCGTCTTTCCATAAAGACCCCGCAGTTCTATTCTCCCCATCTATGGAGCTCTCTTCTCCCTTCAAGCATCTCCTAAGACCAAATGCCTCACCTTCACCTGACCTTTCCTTTTCTTCCAGCTTCTCCGCTTTTCCCCTTCAAATCCACCTTAGAAATCCAAAATTCAAACAACCCATTTCGCCAAATTTCCGTATCTTCGCCGTTGCCGTAGACCCCCAAGAACTTCCCAGGAGCAGTCCTCAAAGGCTCCTCAAGGAGCTCGAAGAGCGTAAGAAGGTCGTCTTTCCGAAGAAAAAGGTTCCCCCGAAGAGATTCATTCTCAAACCCCCATTAGATGACGCCAAATTAGCAGAGAGATTCCTTAACAGTCCTCAATTGTCACTGAAAGCGTTCCCTTTATTGAGCTCTTGTTTGCCATCCTCCAGACTCAACAATGCCGACAAGACTTGGATTGACGAGTACCTGCTTGAAGCCAAGCAGGCTCTTGGGTATCCCCTTGAGCCGTCTGATCGGTTCGGCGACGACAATCCGGCTAAACAGTTCGATACCTTATTGTACTTGGCCTTCCAACATCCATCATGCGAGAGGACGAACGCTAGGCACGTCCGGTCAGGGCATTCGAGGTTGTGGTTTCTAGGGCAATACGTGCTTGAGTTGGCACTTGCCGAGTACTTCTTGCAGAGGTATCCGAGGGAGTCTCCAGCTCCAATGAGGGAGAGAATGTTTGGGTTAATAGGAAAAAGGAATCTGCCCAAGTGGGTCAAAGCTGCTAGCTTACAGAATTTGATTTTCCCATTTGATGATATGGATAAATTAGTTCGGAAGGAGCGAGAGCCGCCTGTGAAGTCTGTCTTCTGGGCTCTGTTTGGAGCAATATACTTGTGTTTTGGCATGCCAGAAGTATATCGTGTTCTTTTTGAGGTCTTTGGAATGGACCCAGATGATGAGAGCTGCCAGCCAAAATTAAGGAGACAACTTGAAGATGTTGATTATGTATCTGTGGAGTTTGAAAGCAAAAAACTCAGTTGGCAAGATATTGTTGCCTATAAGCCTCCAGAAGATGCCCTTTTTGCACATCCGAGACTTTTCCGGGCTTGTGTTCCACCAGGCTTGCATCGGTTCCGAGGAAACATTTGGGATTATGAAAGCAGACCCCAAGTCATGCAAGTACTGGGATATCCATTACCGATGACTGACAGGATTCCAGATATAACTGAAGCCAGGAACATTGAAATTGGACTTGGGCTTCAGCTGTGTTTCTTGCATCCATCAAAATACAAGTTTGAGCATCCAAGGTTTTGTTTTGAACGCCTAGAATATGTTGGCCAAAAGATTCAGGATCTTGTGATGGCTGAGAGGTTGCTCATGAAGCATCTTGATGCTCCTGGAAAATGGTTACAAGAGAAGCATCGTCGCCTTCTGATGAACAAGTTCTGCGGGAGGTACCTTAGGGACAAGTACCTCCATCGCTTCATCATATATGGTGAACAAGTCCAGGACTCATATGAACACAATAGAAGACTAAGGAACCCAGCTACAACAGCAGTTCAACAAGCCATCCATGGGCTTTCATACACTGTATATGGGAAGCCAGATGTCCGGCGCCTCATGTTTGAAGTTTTTGACTTTGAGCAGATCCAGCCAAAAGCAGTCTAA 1668 46.34 MLIHSSFHKDPAVLFSPSMELSSPFKHLLRPNASPSPDLSFSSSFSAFPLQIHLRNPKFKQPISPNFRIFAVAVDPQELPRSSPQRLLKELEERKKVVFPKKKVPPKRFILKPPLDDAKLAERFLNSPQLSLKAFPLLSSCLPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDRFGDDNPAKQFDTLLYLAFQHPSCERTNARHVRSGHSRLWFLGQYVLELALAEYFLQRYPRESPAPMRERMFGLIGKRNLPKWVKAASLQNLIFPFDDMDKLVRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDDESCQPKLRRQLEDVDYVSVEFESKKLSWQDIVAYKPPEDALFAHPRLFRACVPPGLHRFRGNIWDYESRPQVMQVLGYPLPMTDRIPDITEARNIEIGLGLQLCFLHPSKYKFEHPRFCFERLEYVGQKIQDLVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLRDKYLHRFIIYGEQVQDSYEHNRRLRNPATTAVQQAIHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 555
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu7g01045 555 CDD RIBOc 187 321 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Nenu7g01045 555 Pfam Ribonuclease-III-like 187 308 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Nenu7g01045 555 CDD RIBOc 420 545 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Nenu7g01045 555 PANTHER RIBONUCLEASE III 99 512 - GO:0003725(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0006396(PANTHER)|GO:0010468(PANTHER)
Nenu7g01045 555 SUPERFAMILY RNase III domain-like 420 546 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Nenu7g01045 555 FunFam Ribonuclease III domain-containing protein RNC1, chloroplastic 184 315 - -
Nenu7g01045 555 Gene3D Ribonuclease III domain 184 315 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Nenu7g01045 555 Gene3D Ribonuclease III domain 416 548 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Nenu7g01045 555 SMART riboneu5 187 324 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Nenu7g01045 555 FunFam Ribonuclease III domain-containing protein RNC1, chloroplastic 412 548 - -
Nenu7g01045 555 SUPERFAMILY RNase III domain-like 155 325 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Nenu7g01045 555 ProSiteProfiles Ribonuclease III family domain profile. 188 301 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu7g01045 - -