AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nenu7g01062 ATGGAGTCCGCCTCCATTGCGGCGGCCGTCGATCGTATCGCTGTCTCATCGGCTCCTGGGGACGTTGTTGCTGTTGATTCGATAGAGTTCACCGGCGGAGGAACTGAAAATTCAGGTAACTGCGATTCGCGGGGTTGTGATATGAGTTCGGTGGTCATGGCGGCGAATGAGGGAGAGCATTTAGGTAGTGATGATCAGAAGGAGCAGAACGGGCTTAAGTCACCATGGAAGAAACCAGTTGAGGGGAAGGGAGCTGAGGCTCCGGTGATGGGAGCGAAATCTTGGCCAGCACTTGCTGAAGCACTGCCAAAGAATTCTGATGCTGCTGTAAAGCAAGCGCCTGATGCTGCTTCTCAGACTGCGGATTCTGTTCCGCCGCCGCCACCTCCACCTCCTATTCAGGGATCATTTGGGCCACAGAAACCAGATGGGCTTGCAAACACTAGTCCTACCCATAAGCATCCACCACATCATCACAAAGTAGGCTCTAAGCGTAACCTTCCTCCAAATGGTGTTCCACCTTTTCCTATACCCTTACCTTATCACCAACCACCAATGCCACCTGTTTTTCATGCTGTTGTACCTGGGCCACATATCCCTTTCCATGAGTATGCTTACCAGCCTTATCCTGGACCGTTTCCCAATGTAGAGCCACATATGGTAAAATCTGGATGTGAAACCCACATACAAGCTTTTGTTCCACCAGGCCATGGTGGTGGTATTGATGCTAACAGAAATTTTCAGCCTCCATCAGGACCACCAAGAGGAGATCTCAATGCATATGCTGGCAATTTTGGAAATCGACGACATAATATGCAAGAACATGGTGGCCGTTTTGCACATACATGGCGTCACCAACGAGCATTTAATCCTAGAGACAATATTCATATGCAACAAAATCTTGGACCAAGGGCTTTTGTAAGGCCACCACCTCCATTTTTTGCTCCAGCTCCTGGGTTCATAAATGGTCCAGGTTTTGCAGGTCCTGCTTCTATGTACTATCTTCCTGCTGCACCTCCAGAAACAATTAGAGGACCTCCACCTCGTTTTATTGCACATCCTCCACATCATGTTTTTCCCATCCCAACACCTGAGACAGTAGCTCTGAGAGCTAATATAGTAAAACAAATCGAGTATTATTTCAGTGATGAAAATTTGCAGAAGGACCACTACTTGATTTCCTTAATGGATGACCAAGGATGGGTTCTGATATCCAAAATTGCTGACTTCAATAGGGTTAAGAAAATGACTACAAATGTACTTTTTATTCTGGATGCATTACGGAGCTCAGCTATCATTGAAGTGCAGGGTGACAAGATACGGAGACGTGATGATTGGACAAAGTGGCTTCCAGCTTACAGACAGCATGTGTTTTCTTCAAAATCTGATGAGAAGGGTGCAGCTTCTTTGAAGAATACTGAGTTAAATGAAGGCAATGTTTATGAAAGGGGCATATCTGAGGGGTGCATGGAATTTCCATTGGGTAGTGAAAGTTTGGTGGACCACTTATCCTCAGACAAAGGTACTTCCAAAGTTGAGTGCAGTAATTCAGAAAGCAACACTGAAAATGTGCATTCTGGCAGTGAAACACAACTCCATGGAAATACTGGGGATGCTAGTAGGATGTTTACTTCTGAATCAAGTTCAGAAATCAATTCAGAACAAGTGACCACTTATAGATGTATTTCAGACAAGAATTCAGATGATTCCATCTCCAATATGAAGAATAGCAACACTGATTGCTGTGTCAGCTCTAAATGTTCACGAGGGGATGCACACTCTGTAAGTTATGCTGATCATAAATATCATGGCTTGGATATGATACCAGAGTTGACCACACTGAATCTCGGTGGCTTGTCAAGCGATTATACCGGTGAACATTCTGGGTTTACGAGTGAACAGAACACTTTCATGCTTGATGAAGAATTAGAACTGGAGCAGACAACAATTCGGAAGGATCATCTCTCATCTAGTAGAAGGATTGATGATGATGATGATGAGATGGATGTCAATGATCAGGATGTTCAAAGGCTTATAATTGTCACCCAGAACATAAGGATAGGTGAAGATGATAAAGCTGGAGCAGGAGAATCAAAGCCCATCTCGAGTGAACTTGCTTCTGCAATCAATGATGGCCTTTATTTTTATGAACAAGAGCTTAGGGCAAAGCGGTCTAAGAACAGAAGAAATAACTCCATACTAGAGAATAGAGATGGAGATTCTAGATCCTCTAACCTTGCACCTGTCTTATCAAATTCAAAAGTCAGTGGAAATACTACTGGAAGCAATGGCTCCGAAGAGCCTGTCCATGCTAATTCACGGAGGAGACAAAATAAAAGTGTTAACAAGCAACAGTCATCCCATAAACAACGCTTATTCCCTAGCAATTTTAGGGCACATGGAAATGGTCGTAACCGTCATGGCATCATATCTGAAAGTCCTCCAAGCAATTCAGTGGGATTTTTCTTTGGGTCAACACCCCCAGAAAGTCATGGTCCTATGACTTCAAAATTAAGTGCTTCACCACATGGGCATCTTTCTGGTAGTCCACCTGTGGGCTCTATGCCAAAGCCTTTCCCCCCATTTCAGCATCCAAGTCATCAACTTTTGGAAGAAAATGGTTTCAGGCAGCAGAAGTACCTGAAGTTCCATAAACGTTGCTTAAACGACAGAAAGAAATTGGGAATTGGTTGCAGTGAGGAAATGAATACACTCTATCGGTTTTGGTCATTCTTTCTCAGAAACATGTTTTTTCCTTCTATGTACAATGAGTTCCGCAAATTAGCACTGGAAGATGCTGCTGCCAAGTATAATTATGGACTAGAATGCCTTTTCAGGTTTTACAGTTATGGATTGGAGAAGCAATTCAGAGATGACCTATATGAGGATTTTGAACAGCTTACCCTTGAGTTCTACAATAAAGGCAATCTTTATGGTCTTGAAAAATACTGGGCTTTCCACCATTATCGGGAGCTACGTGATGGAAAAGCACCTCTAAAGAAGCATCCGGAATTGGATAGGTTGTTAAAGGAAGAGTACCGTAGCTTAGATGATTTCCGTGCAAAGGAGAAGGCAGCACGGGAATGCAGTAGCAGTAATAACAGTGGTCCTTCCGAAAGAGAAAAGGAAACACCATTTCTGGGGCAGGGGAAAAACAGAGAAACGTTTCCAAGGTTCGAAGTAGAAACGGAAGAAGCTCGAGCTAAAGGTAGAATTGACAACGATGAAGAAGAGTTTTTCTACAACTCCTCAGCTGAAGCTGGCAAGGTGGAAGTAGGTCCTTTAGTGCTGCCATGGCGAAACCACCCAACCCGACAACCGGATGAAGAAGAAGAAGAAGAAGAACAAGATTGGATCGCACAAGACAATCCACTAAAGAGGAGTGTGATAAAAATCGAAGTATTGACTATTGAGACTTTTTTGCAAGGTGCCTTGGTTTTGGATTTGGAAGCCGAAAACTCCGTCCAAGGTGGAATGGCCGGATGTTGA 3489 43.82 MESASIAAAVDRIAVSSAPGDVVAVDSIEFTGGGTENSGNCDSRGCDMSSVVMAANEGEHLGSDDQKEQNGLKSPWKKPVEGKGAEAPVMGAKSWPALAEALPKNSDAAVKQAPDAASQTADSVPPPPPPPPIQGSFGPQKPDGLANTSPTHKHPPHHHKVGSKRNLPPNGVPPFPIPLPYHQPPMPPVFHAVVPGPHIPFHEYAYQPYPGPFPNVEPHMVKSGCETHIQAFVPPGHGGGIDANRNFQPPSGPPRGDLNAYAGNFGNRRHNMQEHGGRFAHTWRHQRAFNPRDNIHMQQNLGPRAFVRPPPPFFAPAPGFINGPGFAGPASMYYLPAAPPETIRGPPPRFIAHPPHHVFPIPTPETVALRANIVKQIEYYFSDENLQKDHYLISLMDDQGWVLISKIADFNRVKKMTTNVLFILDALRSSAIIEVQGDKIRRRDDWTKWLPAYRQHVFSSKSDEKGAASLKNTELNEGNVYERGISEGCMEFPLGSESLVDHLSSDKGTSKVECSNSESNTENVHSGSETQLHGNTGDASRMFTSESSSEINSEQVTTYRCISDKNSDDSISNMKNSNTDCCVSSKCSRGDAHSVSYADHKYHGLDMIPELTTLNLGGLSSDYTGEHSGFTSEQNTFMLDEELELEQTTIRKDHLSSSRRIDDDDDEMDVNDQDVQRLIIVTQNIRIGEDDKAGAGESKPISSELASAINDGLYFYEQELRAKRSKNRRNNSILENRDGDSRSSNLAPVLSNSKVSGNTTGSNGSEEPVHANSRRRQNKSVNKQQSSHKQRLFPSNFRAHGNGRNRHGIISESPPSNSVGFFFGSTPPESHGPMTSKLSASPHGHLSGSPPVGSMPKPFPPFQHPSHQLLEENGFRQQKYLKFHKRCLNDRKKLGIGCSEEMNTLYRFWSFFLRNMFFPSMYNEFRKLALEDAAAKYNYGLECLFRFYSYGLEKQFRDDLYEDFEQLTLEFYNKGNLYGLEKYWAFHHYRELRDGKAPLKKHPELDRLLKEEYRSLDDFRAKEKAARECSSSNNSGPSEREKETPFLGQGKNRETFPRFEVETEEARAKGRIDNDEEEFFYNSSAEAGKVEVGPLVLPWRNHPTRQPDEEEEEEEQDWIAQDNPLKRSVIKIEVLTIETFLQGALVLDLEAENSVQGGMAGC 1162
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nenu7g01062 1162 SMART la 367 443 IPR006630 -
Nenu7g01062 1162 CDD LAM 370 442 - -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 727 805 - -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 1098 1120 - -
Nenu7g01062 1162 SUPERFAMILY Winged helix DNA-binding domain 359 454 IPR036390 -
Nenu7g01062 1162 Gene3D - 363 449 IPR036388 -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 825 843 - -
Nenu7g01062 1162 Pfam LARP1 HEAT repeat region 864 1015 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Nenu7g01062 1162 Pfam La domain 373 429 IPR006630 -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 56 91 - -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 121 137 - -
Nenu7g01062 1162 PANTHER LUPUS LA PROTEIN-RELATED 117 962 IPR045180 GO:0003723(PANTHER)
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 648 664 - -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 648 669 - -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 1024 1068 - -
Nenu7g01062 1162 ProSiteProfiles La-type HTH domain profile. 363 452 IPR006630 -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 825 866 - -
Nenu7g01062 1162 SMART dm15 955 990 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Nenu7g01062 1162 SMART dm15 874 915 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Nenu7g01062 1162 SMART dm15 916 954 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 737 768 - -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 247 269 - -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 778 793 - -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 503 555 - -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 104 175 - -
Nenu7g01062 1162 MobiDBLite consensus disorder prediction 60 74 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nenu7g01062 K18757 la-related protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nenu Nenu-Chr6:7576712 Nenu7g01062 Nenu-Chr7:23501299 dispersed
Nenu Nenu-Chr7:28128385 Nenu7g01062 Nenu-Chr7:23501299 dispersed
Nenu Nenu-Chr7:23501299 Nenu5g02921 Nenu-Chr5:77891022 transposed