Gene detail

Gene Search

Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Nin5g00101	ATGGGGAAGCAAGGACCTTGCTATCACTGTGGTGTTACAAGCACTCCTCTCTGGCGAAATGGACCTCCAGATAAGCCTATACTCTGCAATGCATGTGGTTCTCGTTGGAGAACAAAAGGAACACTTGTCAACTACACCCCTCTTCATGCTAGGTCAGAACCTGATGAATTTGAGGACCATCGTGTGTCCAAGGTGAAGACCATATCTATTAAGAACAAAGAGGTGAAATTACTGAAAAGAAAACAAATTCATGACAATACAGTATTCGGAGGGCTTCCTCCTGATTATAATCAGGGAATTCGTAAGGGGTTTGACGAAGATACAAGTAATAGATCAAGTTCTGGGTCTGCTATTTCCAACTCTGATAGCTGTATGCAGCTTGGCAGTGCAGATGCAAGTGATTTGACAGGTCCAGCTCAATCTGTTGTGTGGGACACAATGGTACCTTCAAGGAAGAGAACTTGTGTGAATCGGCCAAAGCAATCTCCTGTGGAGAAGCTGACTAGAGATCTGTATACCATCTTACATGAACAACAATCATACTTCTCTGGATCATCTGAGGAGGATCTGCTATTCGAAAGCGGCACACCAATGGTTTCTGTTGAGATAGGGCATGGGAGTGTACTTATTCGGCATCCTAACTCTATGACTCGAGAAGAGGAATCTGAAGCCAGTTCTCTTTCAGTTGATAACAAGCCCCATTCTATGAATGAAGCTTATTCGCGGTTGACTACTCTTCCTGTACATAGTGTTAACAAGAGTGTCAATTTTTCGTCCCGGAGGATGCTTGAAAAGCCCAAAAAGCCTACTGCACAGGGGATGAATCAAGATCTTGCTGTTAGGGACAACACTAAGGATGAAATCTTACGTATCATAGCAAACCATAACTCCCCACTCTGCCACATAGATCTAAAAGATATTATTACCTTTGAGGAGTTTTCAACTCACATGACAAGTGATGAACAGCAGCAACTCTTGAAGTGTTTACCTGCTGTTGATTCTGCTGAACTGCCTGATAGCCTCAAAAGCATGTTTGACAGCTCTCAGTTTCAGGAGAACCTATCATCCTTCCTGAAACTTCTCACAGAAGGAGTTTTTGATCTCTCCTTGTCGGGTGTGAAACCTGAAGAGGTTAAAAAACTGAAGAAGCTCTCTCTGTTAAATGTGACGAAATCCAAGTGGGTGGAACAATATAATGTTGTTCAGGATTTGAAGTTGAAAAATGATAATGTGGGGTCTATGGTTGAAGAACACAATACTGTTGCTACTGTCCGTTCAGCGAACATAAAGAGATCACGGGATGCGCAGTATCATGCTTTTCCAGGAGCAAGGACTACAATGAAGAGCCCCAAGGGAGTTTTGAAGGCCAACTATGAACAAAAGGAGACCATAGACAATGATGGCTCATGCTTCAGTCCAAAAAGCTTATTTGCCTTGCCTCCTGATAATAGCTCCCTTCTGCTCGAATCCTTGAGATATGCAGATGAAAGTTCTGATCAGGATCTTTTGCTGGATGTCCCATCACACAGCTCATTTCCTCAAGCAGAACTACTGCTTCCGAGTTCAAATTTTGCAGCACAAGCAAGCACTAGTAGTAGCTCAATATACCAGAGTTTCATCCGACCTTGA	1629	43.03	MGKQGPCYHCGVTSTPLWRNGPPDKPILCNACGSRWRTKGTLVNYTPLHARSEPDEFEDHRVSKVKTISIKNKEVKLLKRKQIHDNTVFGGLPPDYNQGIRKGFDEDTSNRSSSGSAISNSDSCMQLGSADASDLTGPAQSVVWDTMVPSRKRTCVNRPKQSPVEKLTRDLYTILHEQQSYFSGSSEEDLLFESGTPMVSVEIGHGSVLIRHPNSMTREEESEASSLSVDNKPHSMNEAYSRLTTLPVHSVNKSVNFSSRRMLEKPKKPTAQGMNQDLAVRDNTKDEILRIIANHNSPLCHIDLKDIITFEEFSTHMTSDEQQQLLKCLPAVDSAELPDSLKSMFDSSQFQENLSSFLKLLTEGVFDLSLSGVKPEEVKKLKKLSLLNVTKSKWVEQYNVVQDLKLKNDNVGSMVEEHNTVATVRSANIKRSRDAQYHAFPGARTTMKSPKGVLKANYEQKETIDNDGSCFSPKSLFALPPDNSSLLLESLRYADESSDQDLLLDVPSHSSFPQAELLLPSSNFAAQASTSSSSIYQSFIRP	542

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Nin5g00101	542	CDD	ZnF-GATA	6	54	IPR000679	GO:0006355(InterPro)\|GO:0043565(InterPro)
	Nin5g00101	542	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	5	46	-	-
	Nin5g00101	542	Gene3D	-	3	83	IPR013088	GO:0006355(InterPro)\|GO:0008270(InterPro)
	Nin5g00101	542	ProSiteProfiles	DEUBAD (DEUBiquitinase ADaptor) domain profile.	295	404	IPR044867	-
	Nin5g00101	542	Pfam	Asx homology domain	289	368	IPR028020	-
	Nin5g00101	542	FunFam	GATA transcription factor 27	3	84	-	-
	Nin5g00101	542	MobiDBLite	consensus disorder prediction	109	135	-	-
	Nin5g00101	542	MobiDBLite	consensus disorder prediction	100	135	-	-
	Nin5g00101	542	Gene3D	-	290	390	IPR038108	-
	Nin5g00101	542	PANTHER	OSJNBB0038F03.10 PROTEIN	1	371	IPR044589	-
	Nin5g00101	542	Pfam	GATA zinc finger	7	41	IPR000679	GO:0006355(InterPro)\|GO:0043565(InterPro)
	Nin5g00101	542	ProSiteProfiles	GATA-type zinc finger domain profile.	7	40	IPR000679	GO:0006355(InterPro)\|GO:0043565(InterPro)
	Nin5g00101	542	SMART	GATA-3	1	55	IPR000679	GO:0006355(InterPro)\|GO:0043565(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Nin5g00101	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Nin	Nin-Chr4:49360961	Nin5g00101	Nin-Chr5:966503	dispersed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Nin1g01449	.	2	317	C2C2-Gata Transcription Factor family	AT5G66320	46.866	7.89e-62	201.0
	Nin2g02832	.	12	331	C2C2-Gata Transcription Factor family	AT5G25830	47.522	1.25e-78	242.0
	Nin3g00770	.	35	146	C2C2-Gata Transcription Factor family	AT3G06740	46.721	8.83e-25	91.3
	Nin4g01824	.	17	294	C2C2-Gata Transcription Factor family	AT3G50870	37.072	3.30e-46	155.0
	Nin4g02003	.	25	293	C2C2-Gata Transcription Factor family	AT3G51080	46.237	1.57e-52	175.0
	Nin4g02476	.	148	352	C2C2-Gata Transcription Factor family	AT4G26150	46.429	1.62e-39	141.0
	Nin4g02695	.	14	78	C2C2-Gata Transcription Factor family	AT4G17570	56.923	1.72e-20	86.7
	Nin5g00101	.	1	507	C2C2-Gata Transcription Factor family	AT4G17570	49.333	3.78e-143	421.0
	Nin5g00855	.	65	331	C2C2-Gata Transcription Factor family	AT5G25830	58.824	4.00e-97	290.0
	Nin5g01981	.	1	149	C2C2-Gata Transcription Factor family	AT3G06740	46.429	1.15e-38	127.0
	Nin6g00959	.	50	256	C2C2-Gata Transcription Factor family	AT2G45050	57.488	1.78e-75	230.0
	Nin7g00194	.	20	286	C2C2-Gata Transcription Factor family	AT1G08010	36.201	1.15e-40	141.0
	Nin7g00654	.	59	243	C2C2-Gata Transcription Factor family	AT2G45050	39.316	7.18e-42	142.0
	Nin7g02748	.	8	264	C2C2-Gata Transcription Factor family	AT3G24050	43.13	3.57e-52	169.0
	Nin9g00540	.	20	263	C2C2-Gata Transcription Factor family	AT4G32890	36.577	3.66e-45	154.0
	Nin9g01168	.	36	57	C2C2-Gata Transcription Factor family	AT5G49300	95.455	6.89e-10	51.2

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Nin	ASXH	2.2e-07	No_clan		TF	C2C2-GATA