AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g00119 ATGGTAAAGTTCCACGAGCACCTAATCAGCGATCTTCTAGAAGAACCGGGCGGCGGACTGGTGGTTCTCTCCGCCGGACTAGGGTTGCACAAGCTGATCTCCGCCTTACTCCTCCTCCACCACTCCTCCCAAGGCACTCTCCTCATCCTCTCCGCCACTCCTCCTCAGAAACAATCTATCATCACCGCCTTCCAAGCCCTAACCGCCACCGCCACCACCGCTGAACCCACCAATTCGCCGTCGGAAATCACCTCCGACCTCCCCGCACACCAACGCCTCTCCCTCTACTCCTCCGGCGGCGTTTTCTTTATCACATCCCGGATTCTCATCGTTGATTTGCTCACTCACCGCCTTCCGACGTCAAATGTTGCCGGGATCATGCTCTTGAATGCTCATTCCCTGTCGGATACTTCTACCGAGGCTTTTATTGTTCGGATTCTCCGGTCCACGAATCGGTCGGTTTATGTGAGGGCTTTTTCTGATCGGCCCCATTCCATGGTTGCCGGTTTTGCTAAGGCCGAGAGGACGTTAAAGTGTTTGTTTATCAGAAAACTACATCTCTGGCCTAGGTTTCAGGTATATGTATCTGAAGATTTGGAGAGAGATCCACCAGAAGTGGTGGACATTAGAGTACCCATGTCAGGTTATATGGTGGGTATTCAGAAAGCAGTGATTGAAGTTATGGATGCTTGCTTGAAGGAGATGAGGAAGACTAACAAGGTAGATGTGGAGGACCTAACAGTGGAAAACGGTTTGTTCAAGTCTTTTGATGAGATCATAAGGCGGCAGTTAGATCCAATTTGGCATACATTGGGGAAGAAGACTAAGCAGCTTGTCATGGATTTAAAAACTTTGCGGAAGTTGCTAGATTATCTTGTTAGGTATGATGCAGTAACTTATTTGAAGTATCTGGATTCTCTAAGAGCATCAGAGAGTTTTCGATCTGTTTGGATATTTGCAGAGTCTAGTTATAAGATATTCGAGTATGCGAAGAAACGGGTTTATAACTTTGGGAGGTCAGATGGTGGAAAATCAAAGGGACAAGGTAAAAGCTTGAACTCCAAAAAGAGAAAGTTGGATAACGGCAATGAAGCTTCGCTGGCAATGGATGTCAATGATCAGGTAGTTCTGGAAGAAGTCCTAGAGGAGGCACCAAAGTGGAAGGTGTTGCGTGAGGTTCTTGAAGAAATAGAAGAAGAAAGGGAGAAGCGTGCTTCAGTTGAATGTCCAGAAGTTGACAATGATATTGTTTTGGTTGCATGTAAGGATGAACACTCGTGCATGCAGCTTGAAGAGTGCATCATAAGTGGTCCGCGTAAGGTCATGCAAGGAGAATGGGAGAAGTATTTGCTGAGCAAAGTTCAGCTGCATGCCTTACCAAAACGTGGTAAGAAGAAGCAGAAGGAGCCAAAAGGTTTTGGAGTCCTCGACGGAGTGATTCCTGTCTCAACTGGGAAGAAATCAGAAAGTAGTAGTTTAGTTATGCAAGAACGTGATGCGCTGTTGGCAGCAGCATCAGAAATAAGTAAGCAAGCCCAAACGGATACTAATGCTGGTGATAATCATCAAACTTGTGCAGAAAGTAGTGGGCATGGAAAATTAAGGGGTAAAGGAAGGAAGAAAATGCCGTCAACAAATGTTAAACATTCTCTGAAGAAAAGTAATAAGGATAAAATGGAGGTAGCAAAGGAGGAAAATTCTGAAACATCTCGTGAAAATGAAGGCCTTAAAAATAGTACTGATTCGTCGAATCACAGCGGTATGCATAACAACTCACCTGAACAAACATCTGGCGGAAAAAGCATTCTTCAGAAGCATACTGAAAACACCAATACCGAGTCAGTCAGAAGTTCCAAAAGGCTTCCACCGGTGCACTTTTATGCACAAGAAAGTGGTCAACAAATTCTTGACATTTTAAATCCGTCTGCAATTGTTGTTTACCATCCTGACATAGCATTGGTTAGGGAAATTGAAATCTATAAAGCAGAAAATCCCTCAAAAATGGTGAAGGTCTATTTCCTTTTTTATGAAGATTCTACAGAAGTGCAGAAATTTGAGGCCAGTATACGCCGTGAAAATCAAGCATTTGAGTCATTGATTAGGCAGAAGTCAATGATGATGCTGCCAGTTGATCAGGATCCGGTTGGCCTCGGGCTGAACTCTTCCATTGAAACAGAGTCTCTGTCTTCCTTGAATTCGTTAACAAGGAAAGCAGGTGGACGAAAGGAAGCTGACAAGGAAATGCAAATCATCGTGGATATGAGGGAGTTCATGAGCAGCCTTCCAAATGTACTTCATCAGAAGGGGATGCGCATAATACCAGTGACTTTGGAAGTTGGAGATTACATTCTATCACCTTTGATATGTGTGGAAAGAAAAAGTATACAAGATCTTTTTGGAAGTTTTGCTTCAGGTCGCCTTTACCACCAAGTAGAAATGATGGTACGCTATTATCAGATACCGGTTCTCTTGATTGAGTTTTCACAAGACAAAAGCTTCTCATTTCAGTCGACTAGTGACATAGGTGATGATGTCACACCAAATAACATTATATCGAAGCTGTCTTTGCTTGTTTTGCATTTCCCCCGCTTGCGAATTGTTTGGTCTCGCAGCTTGCATGCTACTGCAGAAATATTTGCTTCACTTAAAGCGAATCAAGATGAGCCTGATGAGGCAAAAGCAACTAGAGTTGGTGTCCCTTCAGAAGAGGGTATCGTGGAAGATGACGTGAGAGCCGAGAATTACAACACATCTGCAGTGGAACTCTTGAGACGACTACCAGGTGTGACAGATGCAAACTACAGGGCTATTATGGATGGGTGCAGCAGCTTAGCCGAACTTGCACTCCTTCCAGTAGAGAGACTAGCCGAATTGATGGGTGGCCAGAAAGCAGCCAAGACTTTAAGGGATTTCCTCGACGCCAAATATCCAACGCTGCTTTAG 2943 44.41 MVKFHEHLISDLLEEPGGGLVVLSAGLGLHKLISALLLLHHSSQGTLLILSATPPQKQSIITAFQALTATATTAEPTNSPSEITSDLPAHQRLSLYSSGGVFFITSRILIVDLLTHRLPTSNVAGIMLLNAHSLSDTSTEAFIVRILRSTNRSVYVRAFSDRPHSMVAGFAKAERTLKCLFIRKLHLWPRFQVYVSEDLERDPPEVVDIRVPMSGYMVGIQKAVIEVMDACLKEMRKTNKVDVEDLTVENGLFKSFDEIIRRQLDPIWHTLGKKTKQLVMDLKTLRKLLDYLVRYDAVTYLKYLDSLRASESFRSVWIFAESSYKIFEYAKKRVYNFGRSDGGKSKGQGKSLNSKKRKLDNGNEASLAMDVNDQVVLEEVLEEAPKWKVLREVLEEIEEEREKRASVECPEVDNDIVLVACKDEHSCMQLEECIISGPRKVMQGEWEKYLLSKVQLHALPKRGKKKQKEPKGFGVLDGVIPVSTGKKSESSSLVMQERDALLAAASEISKQAQTDTNAGDNHQTCAESSGHGKLRGKGRKKMPSTNVKHSLKKSNKDKMEVAKEENSETSRENEGLKNSTDSSNHSGMHNNSPEQTSGGKSILQKHTENTNTESVRSSKRLPPVHFYAQESGQQILDILNPSAIVVYHPDIALVREIEIYKAENPSKMVKVYFLFYEDSTEVQKFEASIRRENQAFESLIRQKSMMMLPVDQDPVGLGLNSSIETESLSSLNSLTRKAGGRKEADKEMQIIVDMREFMSSLPNVLHQKGMRIIPVTLEVGDYILSPLICVERKSIQDLFGSFASGRLYHQVEMMVRYYQIPVLLIEFSQDKSFSFQSTSDIGDDVTPNNIISKLSLLVLHFPRLRIVWSRSLHATAEIFASLKANQDEPDEAKATRVGVPSEEGIVEDDVRAENYNTSAVELLRRLPGVTDANYRAIMDGCSSLAELALLPVERLAELMGGQKAAKTLRDFLDAKYPTLL 980
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g00119 980 Coils Coil 552 579 - -
Nin5g00119 980 MobiDBLite consensus disorder prediction 576 618 - -
Nin5g00119 980 MobiDBLite consensus disorder prediction 511 528 - -
Nin5g00119 980 Gene3D - 907 978 - -
Nin5g00119 980 CDD XPF-nuclease-XPF-euk 749 883 IPR047520 -
Nin5g00119 980 SMART ERCC4-2 749 829 IPR006166 GO:0003677(InterPro)|GO:0004518(InterPro)
Nin5g00119 980 MobiDBLite consensus disorder prediction 511 618 - -
Nin5g00119 980 MobiDBLite consensus disorder prediction 550 575 - -
Nin5g00119 980 Gene3D - 749 894 - -
Nin5g00119 980 PANTHER DNA REPAIR ENDONUCLEASE XPF 2 979 - GO:0000014(PANTHER)|GO:0000110(PANTHER)|GO:0000712(PANTHER)|GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0006296(PANTHER)|GO:1901255(PANTHER)
Nin5g00119 980 FunFam DNA repair endonuclease UVH1 907 979 - -
Nin5g00119 980 SUPERFAMILY RuvA domain 2-like 911 975 IPR010994 -
Nin5g00119 980 Pfam ERCC4 domain 752 882 IPR006166 GO:0003677(InterPro)|GO:0004518(InterPro)
Nin5g00119 980 SUPERFAMILY Restriction endonuclease-like 746 884 IPR011335 -
Nin5g00119 980 FunFam DNA repair endonuclease XPF 749 893 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g00119 K10848 DNA excision repair protein ERCC-4 [EC:3.1.-.-]