AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Nin5g00125 ATGCATAATAGAGAGAGAGGCGGATCTAAACTGGAAATAGGGCACCATGTTGATCGGAAACGCGTGAATGAATCTTTGGATAAGCATTTGGAACGATCTTCCCCGGCAACTTCCAGGGGATTGAACGGCAAAGATAAGGATCGGTCTGGCACTGTTCCCAACTCAAGGTTACCTTCTCGTTCCAGGTCTACGCCCGACAAGAAATCCTTAACAGCAAATCCGGAGGAAACTTTAGCAGAGGAATCTGAAACAGACAGCGAGGAGTCATACGTTAGTGGCTCAGATGGGGATGATACATCTTGGATATCATGGTTTTGCAGTCTTCGAGGGAATGAATTTTTCTGTGAAGTCGATGATGATTACATCCAAGATGATTTCAACCTGTGTGGTTTGAGCAACCAAGTTCCTTATTATGATTATGCTCTTGATTTAGTTCTGGATATTGAATCTTCTCATGGTGATGTGTTCACAGAGGAACAGAATGAACTTATTGAGTCAGCAGCCGAGATGCTTTATGGCCTAATTCATGTTCGATATATATTAACGACTAAAGGATTGGGAGCCATGCTGGAGAAGTACAAGAACGCAGAATTTGGCAGATGTCCAAGAGTCCATTGCTGTGGACAACCTTGTCTTCCTGTTGGTCAGTCTGACATTTCTAGACAAAGCACAGTGAAAATTTACTGCCCAAAGTGTGAAGATATTTATACCCCTCAATCCAGGTTTCAAGATAACCTCGATGGAGCTTATTTTGGGTCCACATTTCCTCACTTGTTCCTGATGACATATGGGCACCTCAAACCACAGAAGGCATCACAGAACTACGTTCCTAGAGTATTTGGGTTCAAGGTCCGCAACCCATGA 864 43.52 MHNRERGGSKLEIGHHVDRKRVNESLDKHLERSSPATSRGLNGKDKDRSGTVPNSRLPSRSRSTPDKKSLTANPEETLAEESETDSEESYVSGSDGDDTSWISWFCSLRGNEFFCEVDDDYIQDDFNLCGLSNQVPYYDYALDLVLDIESSHGDVFTEEQNELIESAAEMLYGLIHVRYILTTKGLGAMLEKYKNAEFGRCPRVHCCGQPCLPVGQSDISRQSTVKIYCPKCEDIYTPQSRFQDNLDGAYFGSTFPHLFLMTYGHLKPQKASQNYVPRVFGFKVRNP 287
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Nin5g00125 287 PRINTS Casein kinase II regulatory subunit family signature 100 116 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nin5g00125 287 PRINTS Casein kinase II regulatory subunit family signature 197 218 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nin5g00125 287 PRINTS Casein kinase II regulatory subunit family signature 247 264 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nin5g00125 287 PRINTS Casein kinase II regulatory subunit family signature 219 240 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nin5g00125 287 PRINTS Casein kinase II regulatory subunit family signature 172 193 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nin5g00125 287 PRINTS Casein kinase II regulatory subunit family signature 117 131 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nin5g00125 287 MobiDBLite consensus disorder prediction 1 34 - -
Nin5g00125 287 ProSitePatterns Casein kinase II regulatory subunit signature. 201 232 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nin5g00125 287 MobiDBLite consensus disorder prediction 52 77 - -
Nin5g00125 287 MobiDBLite consensus disorder prediction 78 92 - -
Nin5g00125 287 Gene3D - 198 272 - -
Nin5g00125 287 FunFam Casein kinase II subunit beta 198 270 - -
Nin5g00125 287 MobiDBLite consensus disorder prediction 1 96 - -
Nin5g00125 287 PANTHER CASEIN KINASE II SUBUNIT BETA 80 285 IPR000704 GO:0005737(PANTHER)|GO:0005956(PANTHER)|GO:0005956(InterPro)|GO:0019887(PANTHER)|GO:0019887(InterPro)
Nin5g00125 287 FunFam Casein kinase II subunit beta 93 197 - -
Nin5g00125 287 SUPERFAMILY Casein kinase II beta subunit 98 286 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Nin5g00125 287 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 93 197 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Nin5g00125 287 Pfam Casein kinase II regulatory subunit 100 283 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Nin5g00125 287 SMART CK-II-beta-2 100 283 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Nin5g00125 K03115 casein kinase II subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Nin Nin-Chr5:1176001 Nin6g01185 Nin-Chr6:16372490 wgd