AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Nin5g00385 | ATGGCGGTTGCTGGTGGCGGTGTCGGTGGTGGTGGTGGCGGCGCTGGAGCAATAGGAGTGGAACCATGGAAAGCACATGCGGCGATGGCGCTGGCGCAGGTCTTCAATGGCGGATACCATGTTATCACAAAGGTGGCTCTGAATAATGGGGTCAATCAGATTGTGTTCTGCGTCTACCGGGACCTGATCGCCCTTTCTATCCTTGCTCCAATCGCCTACTTTAGAGACAAAAGAGTTAGACCATCTATGAATAGACGCTTCTTCATGTCATTCGTATTCCTTGGCTTTACTGGGATATTCGGGAATCAGCTTTTGTTTCTTTTTGGTCTCGGGTACACAAATCCAACTTATGCTGCAGCTATACAACCTTCCATTCCTGTCTTCACATTTGTATTAGCGGTGTTGATGGGTATAGAATCCGTGAATGTGCTCAGAACTGAAGGTCAGGCCAAAGTTGGTGGTACGCTAATATGTGTTTGTGGTGCCATTTTAATGGTTATGTTCCGGGGCCCGGCCATGTTTGGGAGTACTGAAAGATATATTCCAGTAGAGAGTGAAATAGTTGCCAAGGGTCAACCAGAGCCTGCAGGATGGTTGATTTCGAGTTTTCTAGATTTGGGAATTGACAATTGGCACCTTGGTGCCCTGTGTTTAGTAGGCAACTGCATATGCATGGCTGCCTTTCTAGTCATTCAGGCTAGAGTCTTGGCCAGGTATCCTGCAAATCTATCAGTAACAGCATATTCCTACTTTTTTGGTGCCCTTTGTATGGTTGTGACAGCAGTGTTCATGAAAAATGAGTCAACTGAATGGAGCTTAACGCAATCGGAGCTTTTTGCTGTACTTTATGCTGGTATTGTTGCATCTGCTCTAAATTATGGAATGTTAACATGGTCCAATAAAATCCTTGGCCCAGCTTTGGTTGCTCTTTATAATCCACTTCAACCTGTAGCATCTGCTTTGCTGTCAAGAATTTTCCTTGGAAGCTCCATTTATCTGGGGAGCATTCTAGGAGGGTTTCTTATCATAGCAGGACTATATTTGGTCACTTGGGGTTCATATCGGGAAAAACAGCTTATACTCATTGGATCTGGGGCTATTCCGCGGTCATCAGAACCGCTGATTATCAGGGACTCGTCTGCCAACAAAACTCCGTACCAGATTGCCCAGATTTTCTCTGGGGCTTCCACATCCTTACCAAAGAGCATGGATTAG | 1215 | 45.76 | MAVAGGGVGGGGGGAGAIGVEPWKAHAAMALAQVFNGGYHVITKVALNNGVNQIVFCVYRDLIALSILAPIAYFRDKRVRPSMNRRFFMSFVFLGFTGIFGNQLLFLFGLGYTNPTYAAAIQPSIPVFTFVLAVLMGIESVNVLRTEGQAKVGGTLICVCGAILMVMFRGPAMFGSTERYIPVESEIVAKGQPEPAGWLISSFLDLGIDNWHLGALCLVGNCICMAAFLVIQARVLARYPANLSVTAYSYFFGALCMVVTAVFMKNESTEWSLTQSELFAVLYAGIVASALNYGMLTWSNKILGPALVALYNPLQPVASALLSRIFLGSSIYLGSILGGFLIIAGLYLVTWGSYREKQLILIGSGAIPRSSEPLIIRDSSANKTPYQIAQIFSGASTSLPKSMD | 404 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Nin5g00385 | 404 | Pfam | EamA-like transporter family | 25 | 166 | IPR000620 | GO:0016020(InterPro) | |
| Nin5g00385 | 404 | Pfam | EamA-like transporter family | 213 | 350 | IPR000620 | GO:0016020(InterPro) | |
| Nin5g00385 | 404 | PANTHER | WAT1-RELATED PROTEIN | 27 | 367 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| Nin5g00385 | 404 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 59 | 169 | - | - | |
| Nin5g00385 | 404 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 250 | 356 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Nin5g00385 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Nin | Nin-Chr5:4560866 | Nin5g02630 | Nin-Chr5:49005217 | dispersed | |
| Nin | Nin-Chr5:4560866 | Nin2g00825 | Nin-Chr2:8841485 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Nin1g00537 | . | 18 | 365 | Nodulin-like gene family | AT5G40230 | 38.542 | 5.15e-79 | 246.0 | |
| Nin1g00538 | . | 44 | 349 | Nodulin-like gene family | AT1G70260 | 45.603 | 3.88e-85 | 268.0 | |
| Nin1g00771 | . | 117 | 563 | Nodulin-like gene family | AT4G19180 | 25.054 | 3.21e-38 | 151.0 | |
| Nin1g01166 | . | 1 | 327 | Nodulin-like gene family | AT1G09380 | 56.667 | 9.90e-131 | 377.0 | |
| Nin1g01179 | . | 2 | 359 | Nodulin-like gene family | AT1G09380 | 47.911 | 2.50e-117 | 343.0 | |
| Nin1g01180 | . | 146 | 307 | Nodulin-like gene family | AT1G09380 | 48.148 | 4.13e-45 | 153.0 | |
| Nin1g01261 | . | 16 | 285 | Nodulin-like gene family | AT4G34950 | 71.119 | 1.61e-140 | 406.0 | |
| Nin1g01262 | . | 375 | 564 | Nodulin-like gene family | AT4G34950 | 81.579 | 6.30e-111 | 326.0 | |
| Nin2g00190 | . | 7 | 579 | Nodulin-like gene family | AT5G14120 | 61.938 | 0.0 | 721.0 | |
| Nin2g00387 | . | 13 | 389 | Nodulin-like gene family | AT1G75500 | 78.385 | 0.0 | 602.0 | |
| Nin2g00745 | . | 6 | 532 | Nodulin-like gene family | AT1G74780 | 60.589 | 0.0 | 652.0 | |
| Nin2g00746 | . | 5 | 532 | Nodulin-like gene family | AT1G74780 | 57.331 | 0.0 | 583.0 | |
| Nin2g00825 | . | 16 | 344 | Nodulin-like gene family | AT5G40240 | 40.659 | 7.77e-83 | 255.0 | |
| Nin2g01723 | . | 2 | 374 | Nodulin-like gene family | AT1G21890 | 58.575 | 2.02e-160 | 454.0 | |
| Nin2g01724 | . | 5 | 351 | Nodulin-like gene family | AT1G21890 | 59.654 | 9.09e-158 | 446.0 | |
| Nin2g02352 | . | 3 | 348 | Nodulin-like gene family | AT5G64700 | 45.299 | 3.62e-93 | 281.0 | |
| Nin2g02354 | . | 1 | 336 | Nodulin-like gene family | AT5G64700 | 47.929 | 4.80e-95 | 286.0 | |
| Nin2g02372 | . | 2 | 193 | Nodulin-like gene family | AT3G43660 | 67.662 | 6.05e-95 | 274.0 | |
| Nin2g02492 | . | 7 | 561 | Nodulin-like gene family | AT1G80530 | 55.935 | 0.0 | 617.0 | |
| Nin2g02625 | . | 1 | 346 | Nodulin-like gene family | AT1G25270 | 38.728 | 3.09e-84 | 260.0 | |
| Nin3g01495 | . | 3 | 355 | Nodulin-like gene family | AT5G64700 | 54.085 | 5.56e-123 | 357.0 | |
| Nin3g02232 | . | 444 | 538 | Nodulin-like gene family | AT1G80530 | 52.525 | 5.45e-25 | 99.4 | |
| Nin4g00104 | . | 6 | 579 | Nodulin-like gene family | AT5G14120 | 73.72 | 0.0 | 849.0 | |
| Nin4g00465 | . | 1 | 255 | Nodulin-like gene family | AT1G25270 | 33.203 | 4.09e-36 | 129.0 | |
| Nin4g00482 | . | 18 | 358 | Nodulin-like gene family | AT5G40230 | 42.407 | 1.13e-88 | 292.0 | |
| Nin4g00483 | . | 13 | 356 | Nodulin-like gene family | AT5G40230 | 48.588 | 3.09e-110 | 338.0 | |
| Nin4g00485 | . | 47 | 355 | Nodulin-like gene family | AT5G40230 | 40.694 | 2.80e-78 | 240.0 | |
| Nin4g00486 | . | 1 | 355 | Nodulin-like gene family | AT5G40240 | 50.273 | 1.21e-123 | 359.0 | |
| Nin4g00488 | . | 10 | 358 | Nodulin-like gene family | AT5G40230 | 48.0 | 2.48e-106 | 315.0 | |
| Nin4g00489 | . | 7 | 346 | Nodulin-like gene family | AT5G40230 | 51.906 | 6.96e-123 | 357.0 | |
| Nin4g01938 | . | 16 | 565 | Nodulin-like gene family | AT4G34950 | 61.775 | 0.0 | 690.0 | |
| Nin4g02636 | . | 20 | 198 | Nodulin-like gene family | AT3G43660 | 68.449 | 1.31e-88 | 258.0 | |
| Nin4g02637 | . | 13 | 198 | Nodulin-like gene family | AT3G43660 | 68.041 | 1.62e-89 | 261.0 | |
| Nin4g02641 | . | 13 | 198 | Nodulin-like gene family | AT3G43660 | 67.526 | 3.00e-90 | 262.0 | |
| Nin4g02645 | . | 15 | 198 | Nodulin-like gene family | AT3G43660 | 70.899 | 4.03e-97 | 279.0 | |
| Nin4g02668 | . | 1 | 353 | Nodulin-like gene family | AT1G25270 | 41.322 | 7.79e-90 | 273.0 | |
| Nin4g02669 | . | 7 | 345 | Nodulin-like gene family | AT1G68170 | 38.938 | 2.32e-75 | 235.0 | |
| Nin4g02670 | . | 1 | 327 | Nodulin-like gene family | AT1G25270 | 46.809 | 5.68e-101 | 301.0 | |
| Nin4g02671 | . | 1 | 337 | Nodulin-like gene family | AT1G25270 | 40.173 | 6.12e-92 | 280.0 | |
| Nin4g02672 | . | 1 | 345 | Nodulin-like gene family | AT1G25270 | 39.316 | 6.86e-83 | 256.0 | |
| Nin5g00143 | . | 1 | 359 | Nodulin-like gene family | AT4G30420 | 53.552 | 1.04e-138 | 398.0 | |
| Nin5g00385 | . | 8 | 385 | Nodulin-like gene family | AT3G45870 | 65.385 | 5.94e-169 | 476.0 | |
| Nin5g00610 | . | 97 | 566 | Nodulin-like gene family | AT4G19450 | 60.294 | 0.0 | 531.0 | |
| Nin5g01580 | . | 326 | 364 | Nodulin-like gene family | AT5G47470 | 61.538 | 9.36e-10 | 51.6 | |
| Nin5g02626 | . | 9 | 315 | Nodulin-like gene family | AT3G30340 | 49.84 | 2.93e-115 | 337.0 | |
| Nin5g02630 | . | 13 | 371 | Nodulin-like gene family | AT5G07050 | 36.216 | 2.76e-88 | 270.0 | |
| Nin6g01388 | . | 12 | 392 | Nodulin-like gene family | AT5G07050 | 62.629 | 1.90e-175 | 493.0 | |
| Nin7g00284 | . | 5 | 566 | Nodulin-like gene family | AT2G28120 | 69.702 | 0.0 | 811.0 | |
| Nin7g00917 | . | 2 | 144 | Nodulin-like gene family | AT2G37460 | 65.734 | 4.81e-63 | 196.0 | |
| Nin7g00918 | . | 153 | 378 | Nodulin-like gene family | AT2G37460 | 60.526 | 2.19e-97 | 288.0 | |
| Nin7g01414 | . | 2 | 193 | Nodulin-like gene family | AT3G43660 | 22.581 | 8.03e-08 | 49.7 | |
| Nin7g01625 | . | 7 | 566 | Nodulin-like gene family | AT2G39210 | 63.556 | 0.0 | 722.0 | |
| Nin8g01891 | . | 6 | 499 | Nodulin-like gene family | AT2G30300 | 47.698 | 8.18e-158 | 457.0 | |
| Nin8g02150 | . | 4 | 363 | Nodulin-like gene family | AT5G40230 | 40.992 | 1.06e-88 | 271.0 | |
| Nin8g02151 | . | 13 | 343 | Nodulin-like gene family | AT5G40230 | 41.983 | 6.88e-88 | 268.0 | |
| Nin8g02400 | . | 10 | 389 | Nodulin-like gene family | AT5G07050 | 64.16 | 2.51e-180 | 506.0 | |
| Nin9g00303 | . | 7 | 338 | Nodulin-like gene family | AT2G39510 | 53.116 | 8.98e-128 | 373.0 | |
| Nin9g00304 | . | 4 | 337 | Nodulin-like gene family | AT2G39510 | 50.888 | 4.49e-116 | 339.0 | |
| Nin9g00305 | . | 4 | 337 | Nodulin-like gene family | AT2G39510 | 55.786 | 3.75e-136 | 392.0 | |
| Nin9g00307 | . | 4 | 347 | Nodulin-like gene family | AT2G39510 | 56.901 | 5.64e-138 | 396.0 | |
| Nin9g00308 | . | 4 | 365 | Nodulin-like gene family | AT2G39510 | 57.527 | 1.18e-154 | 439.0 | |
| Nin9g00309 | . | 1 | 368 | Nodulin-like gene family | AT2G39510 | 58.108 | 3.21e-146 | 417.0 | |
| Nin9g00563 | . | 58 | 82 | Nodulin-like gene family | AT1G31470 | 92.0 | 1.89e-09 | 52.4 | |
| Nin9g00652 | . | 3 | 566 | Nodulin-like gene family | AT2G39210 | 68.825 | 0.0 | 807.0 | |
| Nin9g00719 | . | 13 | 48 | Nodulin-like gene family | AT4G19450 | 77.778 | 6.25e-14 | 65.5 | |
| Nin9g01989 | . | 1 | 739 | Nodulin-like gene family | AT4G19180 | 59.713 | 0.0 | 859.0 | |
| Nin9g02042 | . | 7 | 178 | Nodulin-like gene family | AT4G19450 | 35.593 | 1.91e-24 | 98.2 | |
| Nin9g02088 | . | 44 | 542 | Nodulin-like gene family | AT1G31470 | 30.385 | 1.51e-57 | 201.0 | |
| Nin9g02838 | . | 12 | 327 | Nodulin-like gene family | AT1G09380 | 31.646 | 3.24e-60 | 197.0 |